RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 NAT8LQ8N9F0 302 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 APOL2Q9BQE5 337 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 C16orf70Q9BSU1 422 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 RNF39Q9H2S5 420 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 DDX43Q9NXZ2 648 aaKnown RBP13.24□□□□□ -0.29
PTPRN-202ENST00000409251 WARS2Q9UGM6 360 aaKnown RBP13.24□□□□□ -0.29
PTPRN-202ENST00000409251 CDC14AQ9UNH5 594 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 TRIM17Q9Y577 477 aa13.24□□□□□ -0.29
PTPRN-202ENST00000409251 C9JVG2 144 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 P4HA2O15460 535 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 PENKP01210 267 aaPredicted RBP13.23□□□□□ -0.29
PTPRN-202ENST00000409251 SMIM18P0DKX4 95 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 RALBP11234 206 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 SFSWAPQ12872 951 aaKnown RBP13.23□□□□□ -0.29
PTPRN-202ENST00000409251 TRAF2Q12933 501 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 PRPSAP1Q14558 356 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 C1orf127Q8N9H9 656 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 OR52B2Q96RD2 323 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 NDUFA13Q9P0J0 144 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 THEGQ9P2T0 379 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 TIMM13Q9Y5L4 95 aaPredicted RBP13.23□□□□□ -0.29
PTPRN-202ENST00000409251 ERVK-10P10266 1014 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 GNA12Q03113 381 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 BNIP3Q12983 259 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 OLIG2Q13516 323 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 DLG2Q15700 870 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 DGKDQ16760 1214 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 SLC9B1Q4ZJI4 515 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 BNC2Q6ZN30 1099 aaPredicted RBP13.23□□□□□ -0.29
PTPRN-202ENST00000409251 OFCC1Q8IZS5 231 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 ZNF781Q8N8C0 355 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 HAUS8Q9BT25 410 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 SLC4A5Q9BY07 1137 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 COG4Q9H9E3 785 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 AVENQ9NQS1 362 aaPredicted RBP13.23□□□□□ -0.29
PTPRN-202ENST00000409251 EPS15L1Q9UBC2 864 aa13.23□□□□□ -0.29
PTPRN-202ENST00000409251 MYADML2A6NDP7 307 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 NOL3O60936 208 aaKnown RBP13.22□□□□□ -0.29
PTPRN-202ENST00000409251 ZBTB11O95625 1053 aaPredicted RBP13.22□□□□□ -0.29
PTPRN-202ENST00000409251 MMP3P08254 477 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 COL6A2P12110 1019 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 ELNP15502 786 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 CASP2P42575 452 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 ZNF252P-AS1Q0IIN9 211 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 GEN1Q17RS7 908 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 DENND1BQ6P3S1 775 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 RNF135Q8IUD6 432 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 SNX29P2Q8IUI4 249 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 MCUQ8NE86 351 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 PDZD8Q8NEN9 1154 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 SERPINI1Q99574 410 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 KLC2Q9H0B6 622 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 PIF1Q9H611 641 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 EPS8L2Q9H6S3 715 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 PTPRHQ9HD43 1115 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 MICAL3Q7RTP6 2002 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 SBF1O95248 1867 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 MEIS3P2A8K0S8 358 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 KDM1AO60341 852 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 HOXC6P09630 235 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 IDH3AP50213 366 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 FAM219BQ5XKK7 198 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 TTC33Q6PID6 262 aaPredicted RBP13.22□□□□□ -0.29
PTPRN-202ENST00000409251 TMEM40Q8WWA1 233 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 ADPGKQ9BRR6 497 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 PCDH12Q9NPG4 1184 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 A0A1W2PPW3 197 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 ZBTB14O43829 449 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 TGDSO95455 350 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 THRAP10827 490 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 HDCP19113 662 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 MIPP30301 263 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 NR1H2P55055 460 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 PLPPR4Q7Z2D5 763 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 GPR141Q7Z602 305 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 ACOT1Q86TX2 421 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 OR6B3Q8NGW1 331 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 HASPINQ8TF76 798 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 LRTOMTQ8WZ04 291 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 NOL11Q9H8H0 719 aaKnown RBP13.22□□□□□ -0.29
PTPRN-202ENST00000409251 GPAMQ9HCL2 828 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 TUBGCP4Q9UGJ1 667 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 CPSF3Q9UKF6 684 aaKnown RBP13.22□□□□□ -0.29
PTPRN-202ENST00000409251 BARX2Q9UMQ3 279 aaPredicted RBP13.22□□□□□ -0.29
PTPRN-202ENST00000409251 COQ4Q9Y3A0 265 aa13.22□□□□□ -0.29
PTPRN-202ENST00000409251 TMEM191CA6NGB0 347 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 M0QYV0 167 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 ATP9BO43861 1147 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 PRPSAP2O60256 369 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 ITGAVP06756 1048 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 ARSAP15289 507 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 YWHAZP63104 245 aaKnown RBP13.21□□□□□ -0.29
PTPRN-202ENST00000409251 SLC10A6Q3KNW5 377 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 TWF2Q6IBS0 349 aaKnown RBP13.21□□□□□ -0.29
PTPRN-202ENST00000409251 TMEM214Q6NUQ4 689 aaKnown RBP13.21□□□□□ -0.29
PTPRN-202ENST00000409251 MAMDC4Q6UXC1 1216 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 UNC5AQ6ZN44 842 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 PRR23BQ6ZRT6 265 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 TMEM110Q86TL2 294 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms