RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 KLHL24Q6TFL4 600 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 ITFG1Q8TB96 612 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 METTL6Q8TCB7 284 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 EPS8L1Q8TE68 723 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 BHMTQ93088 406 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 CELF6Q96J87 481 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 MIEF1Q9NQG6 463 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 AHSPQ9NZD4 102 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 HACL1Q9UJ83 578 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 SLC25A13Q9UJS0 675 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 NCANO14594 1321 aa10.43□□□□□ -0.74
LIMCH1-203ENST00000396595 CCNT2O60583 730 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 MBL2P11226 248 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 CCDC130P13994 396 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 FOSL1P15407 271 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 NEK3P51956 506 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 TRAF3Q13114 568 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 EIF2B5Q13144 721 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 NR1D2Q14995 579 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 PDK4Q16654 411 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 GET4Q7L5D6 327 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 SYTL1Q8IYJ3 562 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 PYDC1Q8WXC3 89 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 TMEM169Q96HH4 297 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 TBC1D10AQ9BXI6 508 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 CEP41Q9BYV8 373 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 FKBP14Q9NWM8 211 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 PLCL2Q9UPR0 1127 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 RAMP2O60895 175 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 KATNA1O75449 491 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 PAX3P23760 479 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 ALDH7A1P49419 539 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 SLC6A3Q01959 620 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 GSTA3Q16772 222 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 CBWD6Q4V339 395 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 CBWD3Q5JTY5 395 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 CBWD5Q5RIA9 395 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 INTS5Q6P9B9 1019 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 CASP12Q6UXS9 341 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 PALB2Q86YC2 1186 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 CCDC36Q8IYA8 594 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 WDR36Q8NI36 951 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 TRPC4APQ8TEL6 797 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 FNIP1Q8TF40 1166 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 GLT1D1Q96MS3 346 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 UNKQ9C0B0 810 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 ADPRHL2Q9NX46 363 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 ANAPC2Q9UJX6 822 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 BTBD3Q9Y2F9 522 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 HBS1LQ9Y450 684 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 FAM86B1E9PN63 330 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 FAM86B2P0C5J1 330 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 PCNAP12004 261 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 ZNF7P17097 686 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 DRD4P21917 467 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 KDELR1P24390 212 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 PGM5Q15124 567 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 PARP6Q2NL67 630 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 TIMM50Q3ZCQ8 353 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 C3orf67Q6ZVT6 689 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 AKAP14Q86UN6 197 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 ZNF285Q96NJ3 590 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 KLHL32Q96NJ5 620 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 APBA2Q99767 749 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 KIAA1683Q9H0B3 1180 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 POLLQ9UGP5 575 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 ING4Q9UNL4 249 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 COMMD3-BMI1R4GMX3 469 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 RBL1P28749 1068 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 THPOP40225 353 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 SCNN1BP51168 640 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 ADIGQ0VDE8 80 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 TOP3AQ13472 1001 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 CTXN3Q4LDR2 81 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 TMEM132CQ8N3T6 1108 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 CARNMT1Q8N4J0 409 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 C18orf25Q96B23 403 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 GRIP2Q9C0E4 1043 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 POMKQ9H5K3 350 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 LRRC19Q9H756 370 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 RABL2AQ9UBK7 228 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 UBA2Q9UBT2 640 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 MLXQ9UH92 298 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 SMIM31A0A1B0GVY4 71 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 PSMD12O00232 456 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 PABPC1P11940 636 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 DARSP14868 501 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 CYP2A7P20853 494 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 PIK3CGP48736 1102 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 TGM3Q08188 693 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 TSNQ15631 228 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 TRIM48Q8IWZ4 208 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 CDK5RAP1Q96SZ6 601 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 TBL1YQ9BQ87 522 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 XPNPEP3Q9NQH7 507 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 ETNK2Q9NVF9 386 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 DDX43Q9NXZ2 648 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 ADAM28Q9UKQ2 775 aa10.42□□□□□ -0.74
LIMCH1-203ENST00000396595 A0A0G2JPF8 293 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 TRIM64CA6NLI5 447 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms