RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 SCAPQ12770 1279 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 PLEKHG4Q58EX7 1191 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 ITPRIPL1Q6GPH6 555 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 TRAF7Q6Q0C0 670 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 PACS1Q6VY07 963 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 RAPH1Q70E73 1250 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 BNIPLQ7Z465 357 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 MON1AQ86VX9 555 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 TNS4Q8IZW8 715 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 IRGQQ8WZA9 623 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 BHMTQ93088 406 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 TBC1D31Q96DN5 1066 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 RPRD1AQ96P16 312 aaPredicted RBP11.37□□□□□ -0.59
TCOF1-203ENST00000394269 LBHD1Q9BQE6 289 aaPredicted RBP11.37□□□□□ -0.59
TCOF1-203ENST00000394269 FICDQ9BVA6 458 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 CRISPLD1Q9H336 500 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 TMEM161AQ9NX61 479 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 TET1Q8NFU7 2136 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 FAM237BA0A1B0GVD1 139 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 FAM159BA6NKW6 160 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 AP2A1O95782 977 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 TSHRP16473 764 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 HNRNPH1P31943 449 aaKnown RBP11.37□□□□□ -0.59
TCOF1-203ENST00000394269 AVPR1AP37288 418 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 PAPOLAP51003 745 aaKnown RBP11.37□□□□□ -0.59
TCOF1-203ENST00000394269 CDK16Q00536 496 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 DSC1Q08554 894 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 TAF12Q16514 161 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 ZNF280DQ6N043 979 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 ARID3BQ8IVW6 561 aaPredicted RBP11.37□□□□□ -0.59
TCOF1-203ENST00000394269 CERS2Q96G23 380 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 TEKT5Q96M29 485 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 ZNF512Q96ME7 567 aaPredicted RBP11.37□□□□□ -0.59
TCOF1-203ENST00000394269 TRIM55Q9BYV6 548 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 CATSPERBQ9H7T0 1116 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 CCSER2Q9H7U1 834 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 LRRC40Q9H9A6 602 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 NT5MQ9NPB1 228 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 CPSF2Q9P2I0 782 aaKnown RBP11.37□□□□□ -0.59
TCOF1-203ENST00000394269 FETUBQ9UGM5 382 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 PLLPQ9Y342 182 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 ITGA2BP08514 1039 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 NMBRP28336 390 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 MAGEA3P43357 314 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 MAGEA6P43360 314 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 ALDH7A1P49419 539 aaKnown RBP11.36□□□□□ -0.59
TCOF1-203ENST00000394269 AIF1P55008 147 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 GALNT2Q10471 571 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 FAM26DQ5JW98 314 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 N4BP2L1Q5TBK1 243 aaPredicted RBP11.36□□□□□ -0.59
TCOF1-203ENST00000394269 NLRP9Q7RTR0 991 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.36□□□□□ -0.59
TCOF1-203ENST00000394269 GRAMD1AQ96CP6 724 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 PGAP3Q96FM1 320 aaPredicted RBP11.36□□□□□ -0.59
TCOF1-203ENST00000394269 FBXO6Q9NRD1 293 aaPredicted RBP11.36□□□□□ -0.59
TCOF1-203ENST00000394269 MOCS1Q9NZB8 636 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 MARCH2Q9P0N8 246 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 IGSF9Q9P2J2 1179 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 IPO11Q9UI26 975 aaKnown RBP11.36□□□□□ -0.59
TCOF1-203ENST00000394269 USH1CQ9Y6N9 552 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 C1QAP02745 245 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 DNAJB2P25686 324 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 BFSP2Q13515 415 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 ALFQ53S48 1182 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 TAF1BQ53T94 588 aaPredicted RBP11.36□□□□□ -0.59
TCOF1-203ENST00000394269 RASIP1Q5U651 963 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 FUT10Q6P4F1 479 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 SPATA6LQ8N4H0 392 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 SEPT8Q92599 483 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 ATP2A3Q93084 1043 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 E2F7Q96AV8 911 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 HDAC11Q96DB2 347 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 MOCOSQ96EN8 888 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 RILPQ96NA2 401 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.36□□□□□ -0.59
TCOF1-203ENST00000394269 ZCWPW1Q9H0M4 648 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 RXFP1Q9HBX9 757 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 KLC4Q9NSK0 619 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 HEY2Q9UBP5 337 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 SLC39A10Q9ULF5 831 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 CHKBQ9Y259 395 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 STARD13Q9Y3M8 1113 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 TRPM7Q96QT4 1865 aa11.36□□□□□ -0.59
TCOF1-203ENST00000394269 CCDC85CA6NKD9 419 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 J3KR12 359 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 CCL22O00626 93 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 ADAM12O43184 909 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 DNAJC6O75061 913 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 FKTNO75072 461 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 OAZ2O95190 189 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 VAPBO95292 243 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 OR1D2P34982 312 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 ARFIP2P53365 341 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 BST1Q10588 318 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 CTBP1Q13363 440 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 TCTN1Q2MV58 587 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 ANKRD20A4Q4UJ75 823 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 RFWD3Q6PCD5 774 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 SERPINB11Q96P15 392 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 GBA3Q9H227 469 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms