RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 RECQL4O94761 1208 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 LDHAP00338 332 aaKnown RBP11.39□□□□□ -0.59
CUX1-204ENST00000393824 MYL4P12829 197 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 MMP8P22894 467 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 HOXD12P35452 270 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 TFAMQ00059 246 aaKnown RBP11.39□□□□□ -0.59
CUX1-204ENST00000393824 PIGHQ14442 188 aaPredicted RBP11.39□□□□□ -0.59
CUX1-204ENST00000393824 LRRC26Q2I0M4 334 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 JADE1Q6IE81 842 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 ARCQ7LC44 396 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 POLNQ7Z5Q5 900 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 HPS6Q86YV9 775 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 NIPA2Q8N8Q9 360 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 ADCY4Q8NFM4 1077 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 CXorf38Q8TB03 319 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 DQX1Q8TE96 717 aaKnown RBP11.39□□□□□ -0.59
CUX1-204ENST00000393824 LINC01599Q8WXQ3 324 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 VWCEQ96DN2 955 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 PFDN4Q9NQP4 134 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 KLHL11Q9NVR0 708 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 TMED5Q9Y3A6 229 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 IPPQ9Y573 584 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 TRIP11Q15643 1979 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 ANK1P16157 1881 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 CEP290O15078 2479 aa11.39□□□□□ -0.59
CUX1-204ENST00000393824 TMEM247A6NEH6 219 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 TRIM49D1C9J1S8 452 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 SERPINB7O75635 380 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 KRT37O76014 449 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 TMEM63AO94886 807 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 FBXO21O94952 628 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 LSM8O95777 96 aaKnown RBP11.38□□□□□ -0.59
CUX1-204ENST00000393824 CALCAP01258 141 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 HLA-DRAP01903 254 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 C1QAP02745 245 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 BPGMP07738 259 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 SNRPAP09012 282 aaKnown RBP11.38□□□□□ -0.59
CUX1-204ENST00000393824 ZNF23P17027 643 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 EN2P19622 333 aaPredicted RBP11.38□□□□□ -0.59
CUX1-204ENST00000393824 GNA15P30679 374 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 CDKN2BP42772 138 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 HSPA13P48723 471 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 CCL23P55773 120 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 CUL2Q13617 745 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 FAM26DQ5JW98 314 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 RARS2Q5T160 578 aaKnown RBP11.38□□□□□ -0.59
CUX1-204ENST00000393824 GRAMD4Q6IC98 578 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 IYDQ6PHW0 289 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 DENND5BQ6ZUT9 1274 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 PIWIL2Q8TC59 973 aaKnown RBP11.38□□□□□ -0.59
CUX1-204ENST00000393824 TRPC4APQ8TEL6 797 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 C18orf25Q96B23 403 aaPredicted RBP11.38□□□□□ -0.59
CUX1-204ENST00000393824 CCDC124Q96CT7 223 aaKnown RBP11.38□□□□□ -0.59
CUX1-204ENST00000393824 CMTM5Q96DZ9 223 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 KCNK16Q96T55 309 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 CGRRF1Q99675 332 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 SLC2A11Q9BYW1 496 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 SIX4Q9UIU6 781 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 APPL1Q9UKG1 709 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 APOBEC2Q9Y235 224 aaKnown RBP11.38□□□□□ -0.59
CUX1-204ENST00000393824 TCRBV7S3A2A0A539 114 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 TRIM43BA6NCK2 446 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 PPEF2O14830 753 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 SIN3BO75182 1162 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 THRAP10827 490 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 ITGAXP20702 1163 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 RPL22P35268 128 aaKnown RBP11.38□□□□□ -0.59
CUX1-204ENST00000393824 GRM5P41594 1212 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 ALDH3B2P48448 385 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 PFKPQ01813 784 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 STX3Q13277 289 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 SYCP2LQ5T4T6 812 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 IGDCC3Q8IVU1 814 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 DEFB107AQ8IZN7 70 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 POU5F2Q8N7G0 328 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 C1orf127Q8N9H9 656 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 HIPK4Q8NE63 616 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 CNBD2Q96M20 576 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 HNRNPABQ99729 332 aaKnown RBP11.38□□□□□ -0.59
CUX1-204ENST00000393824 HAUS8Q9BT25 410 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 OSBPL6Q9BZF3 934 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 ZNF518BQ9C0D4 1074 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 KLC2Q9H0B6 622 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 RPF1Q9H9Y2 349 aaKnown RBP11.38□□□□□ -0.59
CUX1-204ENST00000393824 GOLGA2P5Q9HBQ8 144 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 RRN3Q9NYV6 651 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 PCDHB4Q9Y5E5 795 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 TEX264Q9Y6I9 313 aa11.38□□□□□ -0.59
CUX1-204ENST00000393824 TCRBV5S1A1TA0A578 114 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 MATN2O00339 956 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 CYB561D2O14569 222 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 RFPL1O75677 317 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 ZBED1O96006 694 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 WEE2P0C1S8 567 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 RBP3P10745 1247 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 TCF4P15884 667 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 CYP2C18P33260 490 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 ELK3P41970 407 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 GDF10P55107 478 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 NUP107P57740 925 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms