RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 MTX3Q5HYI7 312 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 SLC9A4Q6AI14 798 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 SLC39A4Q6P5W5 647 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 IGFN1Q86VF2 1251 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 RFX6Q8HWS3 928 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 FAM156AQ8NDB6 213 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 RMDN3Q96TC7 470 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 CIB1Q99828 191 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 PSD2Q9BQI7 771 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 NDEL1Q9GZM8 345 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 TCF7L2Q9NQB0 619 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 PCDHB12Q9Y5F1 795 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 LOXHD1Q8IVV2 1947 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 IQCA1LA6NCM1 817 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 DYNC1LI2O43237 492 aaPredicted RBP14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 AKAP10O43572 662 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 PLA2G6O60733 806 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 KRT7P08729 469 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 RFC1P35251 1148 aaPredicted RBP14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 GRM5P41594 1212 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 HMGCS2P54868 508 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 CUL2Q13617 745 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 TTC33Q6PID6 262 aaPredicted RBP14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 ZBTB46Q86UZ6 589 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 ZNF354CQ86Y25 554 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 CADM3Q8N126 398 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 ZNF781Q8N8C0 355 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 KIFC3Q9BVG8 833 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 TRPV6Q9H1D0 765 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 AGO4Q9HCK5 861 aaKnown RBP14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 COPG2Q9UBF2 871 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 DCDC2Q9UHG0 476 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 VPS51Q9UID3 782 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 ADM5C9JUS6 153 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 ZNF182P17025 639 aaPredicted RBP14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 TCN1P20061 433 aaPredicted RBP14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 CNTFP26441 200 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 BAATQ14032 418 aaPredicted RBP14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 LSM12Q3MHD2 195 aaKnown RBP14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 ARL13BQ3SXY8 428 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 LMBRD2Q68DH5 695 aaPredicted RBP14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 MAP4K3Q8IVH8 894 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 TMEM161BQ8NDZ6 487 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 ZNF606Q8WXB4 792 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 MROQ9BYG7 248 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 EHD1Q9H4M9 534 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 PDZD7Q9H5P4 517 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 APOBEC3GQ9HC16 384 aaKnown RBP14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 CNTN6Q9UQ52 1028 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 CPQQ9Y646 472 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 GNAO1P09471 354 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 CNTN2Q02246 1040 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 TAP1Q03518 808 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 TRAF2Q12933 501 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 NFATC3Q12968 1075 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 PGM5Q15124 567 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 GALNT18Q6P9A2 607 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 NPNTQ6UXI9 565 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 PTAR1Q7Z6K3 402 aaPredicted RBP14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 SIX6OS1Q8N1H7 587 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 TNIP2Q8NFZ5 429 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 DEPDC1BQ8WUY9 529 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 SLCO4A1Q96BD0 722 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 LRRC39Q96DD0 335 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 ZNF641Q96N77 438 aaPredicted RBP14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 ERVK-11Q9UQG0 969 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 SNX13Q9Y5W8 968 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 SNX9Q9Y5X1 595 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 TPP1O14773 563 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 LRCH4O75427 683 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 AMHP03971 560 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 PROZP22891 400 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 PCYT1AP49585 367 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 RFTN1Q14699 578 aaPredicted RBP14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 NDUFA5Q16718 116 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 ZACNQ401N2 412 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 PPP4R4Q6NUP7 873 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 SLC7A3Q8WY07 619 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 HPS1Q92902 700 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 RIT2Q99578 217 aa14.94□□□□□ -0.02
VPS9D1-201ENST00000389386 GOLGA8QA0A0J9YX86 632 aa14.93□□□□□ -0.02
VPS9D1-201ENST00000389386 GOLGA8OA6NCC3 632 aa14.93□□□□□ -0.02
VPS9D1-201ENST00000389386 C9IYK1 514 aa14.93□□□□□ -0.02
VPS9D1-201ENST00000389386 GOLGA8NF8WBI6 632 aa14.93□□□□□ -0.02
VPS9D1-201ENST00000389386 TRIM38O00635 465 aa14.93□□□□□ -0.02
VPS9D1-201ENST00000389386 GCATO75600 419 aa14.93□□□□□ -0.02
VPS9D1-201ENST00000389386 CCNE2O96020 404 aa14.93□□□□□ -0.02
VPS9D1-201ENST00000389386 GNL1P36915 607 aaPredicted RBP14.93□□□□□ -0.02
VPS9D1-201ENST00000389386 QARSP47897 775 aaKnown RBP14.93□□□□□ -0.02
VPS9D1-201ENST00000389386 ARPC4P59998 168 aa14.93□□□□□ -0.02
VPS9D1-201ENST00000389386 RHDQ02161 417 aa14.93□□□□□ -0.02
VPS9D1-201ENST00000389386 ART3Q13508 389 aa14.93□□□□□ -0.02
VPS9D1-201ENST00000389386 SF3B4Q15427 424 aaKnown RBP eCLIP14.93□□□□□ -0.029e-7■■■■□ 24.4
VPS9D1-201ENST00000389386 ARHGEF16Q5VV41 709 aa14.93□□□□□ -0.02
VPS9D1-201ENST00000389386 HMBOX1Q6NT76 420 aa14.93□□□□□ -0.02
VPS9D1-201ENST00000389386 ZBTB49Q6ZSB9 765 aa14.93□□□□□ -0.02
VPS9D1-201ENST00000389386 GET4Q7L5D6 327 aaPredicted RBP14.93□□□□□ -0.02
VPS9D1-201ENST00000389386 ZC3H7AQ8IWR0 971 aaKnown RBP14.93□□□□□ -0.02
VPS9D1-201ENST00000389386 KIAA0319LQ8IZA0 1049 aa14.93□□□□□ -0.02
VPS9D1-201ENST00000389386 SIGLEC10Q96LC7 697 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms