RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 HIGD2BQ4VC39 106 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 FAM160B1Q5W0V3 765 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 IGFL2Q6UWQ7 119 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 DSG4Q86SJ6 1040 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 IQCHQ86VS3 1027 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 ZNF614Q8N883 585 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 FAM46DQ8NEK8 389 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 KLHDC9Q8NEP7 349 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 BRIX1Q8TDN6 353 aaKnown RBP-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 CPT1BQ92523 772 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 C7orf25Q9BPX7 421 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 RLIMQ9NVW2 624 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 GTSE1Q9NYZ3 720 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 DRG1Q9Y295 367 aaKnown RBP-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 STXBP5LQ9Y2K9 1186 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 STARD9Q9P2P6 4700 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 FRAS1Q86XX4 4008 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 LRP2P98164 4655 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 HRNRQ86YZ3 2850 aaPredicted RBP-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 FAT1Q14517 4588 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 BAHCC1Q9P281 2608 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 IGLV7-46A0A075B6I9 117 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 IGHV4-28A0A0C4DH34 117 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 LRCOL1A6NCL2 159 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 SAC3D1A6NKF1 404 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 SHISA7A6NL88 538 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 FOXO6A8MYZ6 492 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 HDAC3O15379 428 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 SOX30O94993 753 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 IGKV1-17P01599 117 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 HNRNPA2B1P22626 353 aaKnown RBP-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 CYP2C19P33261 490 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 IGFALSP35858 605 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 IL15P40933 162 aaPredicted RBP-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 PTGDSP41222 190 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 VPS41P49754 854 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 SATB1Q01826 763 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 KRTAP19-8Q3LI54 63 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 ZFAND6Q6FIF0 208 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 FAM53AQ6NSI3 398 aaPredicted RBP-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 SLC27A1Q6PCB7 646 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 VITQ6UXI7 678 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 CELF2-AS1Q8N7Q2 184 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 MIGA1Q8NAN2 632 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 OR2I1PQ8NGU4 316 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 LNX1Q8TBB1 728 aaPredicted RBP-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 AUTS2Q8WXX7 1259 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 STAMQ92783 540 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 RAB24Q969Q5 203 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 FGFBP2Q9BYJ0 223 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 ZNF304Q9HCX3 659 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 SLC52A3Q9NQ40 469 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 ZNF581Q9P0T4 197 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 ZNF107Q9UII5 783 aaPredicted RBP-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 R3HCC1Q9Y3T6 440 aaKnown RBP-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 IVNS1ABPQ9Y6Y0 642 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 FLNCQ14315 2725 aa-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 LAMA2P24043 3122 aaKnown RBP-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 NIPBLQ6KC79 2804 aaeCLIP-0.43□□□□□ -2.48
RNU6-540P-201ENST00000384622 NID2Q14112 1375 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 ARID1AO14497 2285 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 CACNA1EQ15878 2313 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 KMT2AQ03164 3969 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 MAGEB4O15481 346 aaPredicted RBP-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 GAS7O60861 476 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 KDM4BO94953 1096 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 MOCS3O95396 460 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 SSBP05455 408 aaKnown RBP eCLIP-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 ITGA2BP08514 1039 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 POU3F2P20265 443 aaPredicted RBP-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 HOXA13P31271 388 aaPredicted RBP-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 ETFBP38117 255 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 PHKA1P46020 1223 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 LINC00315P59091 139 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 MYO1EQ12965 1108 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 MALLQ13021 153 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 TUBB2AQ13885 445 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 TERF2Q15554 542 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 CALCRLQ16602 461 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 ZNF530Q6P9A1 599 aaPredicted RBP-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 FBXO46Q6PJ61 603 aaPredicted RBP-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 SPATC1Q76KD6 591 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 H1FOOQ8IZA3 346 aaPredicted RBP-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 PPHLN1Q8NEY8 458 aaKnown RBP-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 IFI44Q8TCB0 444 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 CHTF18Q8WVB6 975 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 ZNF669Q96BR6 464 aaPredicted RBP-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 MTBPQ96DY7 904 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 ZNF799Q96GE5 643 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 TTC14Q96N46 770 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 SENP7Q9BQF6 1050 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 TUBB2BQ9BVA1 445 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 CCSER1Q9C0I3 900 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 CXorf36Q9H7Y0 433 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 TNFRSF19Q9NS68 423 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 TDP1Q9NUW8 608 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 LRFN1Q9P244 771 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 ZNF624Q9P2J8 865 aaPredicted RBP-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 HESX1Q9UBX0 185 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 ASAP1Q9ULH1 1129 aa-0.44□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms