RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 TM4SF1P30408 202 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 TEAD4Q15561 434 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 KCNT1Q5JUK3 1230 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 HACD4Q5VWC8 232 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 NIPAL1Q6NVV3 410 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 OR56A4Q8NGH8 313 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 CD101Q93033 1021 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 MTERF3Q96E29 417 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 SULT2A1Q06520 285 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 FASTKD1Q53R41 847 aaKnown RBP5.03□□□□□ -1.6
PCDH9-201ENST00000377861 DRAXINQ8NBI3 349 aaPredicted RBP5.03□□□□□ -1.6
PCDH9-201ENST00000377861 ACTL9Q8TC94 416 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 RFKQ969G6 155 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 POLR1AO95602 1720 aaPredicted RBP5.03□□□□□ -1.6
PCDH9-201ENST00000377861 KIAA1958Q8N8K9 716 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 RNF149Q8NC42 400 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 CRELD1Q96HD1 420 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 FAM193BQ96PV7 902 aaPredicted RBP5.03□□□□□ -1.6
PCDH9-201ENST00000377861 HINFPQ9BQA5 517 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 PITHD1Q9GZP4 211 aaPredicted RBP5.03□□□□□ -1.6
PCDH9-201ENST00000377861 NECTIN3Q9NQS3 549 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 CLIC2O15247 247 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 SLITRK1Q96PX8 696 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 KIF1BO60333 1816 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 E7ESA3 106 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 KCNN4O15554 427 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 ARIH2O95376 493 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 TDP2O95551 362 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 HLA-DPA1P20036 260 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 NFIXQ14938 502 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 REPS2Q8NFH8 660 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 VANGL2Q9ULK5 521 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 CCNT2O60583 730 aaKnown RBP5.03□□□□□ -1.6
PCDH9-201ENST00000377861 MMTAG2Q9BU76 263 aaKnown RBP5.03□□□□□ -1.6
PCDH9-201ENST00000377861 HIPK3Q9H422 1215 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 VAV3Q9UKW4 847 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 PCDHA11Q9Y5I1 949 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 HEY1Q9Y5J3 304 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 SPDYE2BA6NHP3 402 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 GRIN3BO60391 1043 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 SPDYE6P0CI01 402 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 ATP1A4Q13733 1029 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 ARSHQ5FYA8 562 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 UNC5DQ6UXZ4 953 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 ASRGL1Q7L266 308 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 ZCCHC2Q9C0B9 1178 aaKnown RBP5.03□□□□□ -1.6
PCDH9-201ENST00000377861 RHEBL1Q8TAI7 183 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 RORBQ92753 470 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 CEP19Q96LK0 163 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 DNAJB6O75190 326 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 NOL4O94818 638 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 ZC3H12BQ5HYM0 836 aaKnown RBP5.03□□□□□ -1.6
PCDH9-201ENST00000377861 FBXO47Q5MNV8 452 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 MZT2AQ6P582 158 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 ADAMTSL2Q86TH1 951 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 ASB9Q96DX5 294 aa5.03□□□□□ -1.6
PCDH9-201ENST00000377861 FUBP3Q96I24 572 aaKnown RBP eCLIP5.03□□□□□ -1.6
PCDH9-201ENST00000377861 LOC110117498-PIK3R3F6TDL0 507 aa5.03□□□□□ -1.61
PCDH9-201ENST00000377861 TXNDC9O14530 226 aa5.03□□□□□ -1.61
PCDH9-201ENST00000377861 NPR3P17342 541 aa5.03□□□□□ -1.61
PCDH9-201ENST00000377861 KCTD21Q4G0X4 260 aa5.03□□□□□ -1.61
PCDH9-201ENST00000377861 PIK3R3Q92569 461 aa5.03□□□□□ -1.61
PCDH9-201ENST00000377861 STRA6Q9BX79 667 aa5.03□□□□□ -1.61
PCDH9-201ENST00000377861 TRIM66O15016 1216 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 ADARP55265 1226 aaKnown RBP5.02□□□□□ -1.61
PCDH9-201ENST00000377861 ZNF45Q02386 682 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 EPC2Q52LR7 807 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 ANXA8L1Q5VT79 327 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 ANKS6Q68DC2 871 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 PEX5LQ8IYB4 626 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 PQLC1Q8N2U9 271 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 CYP2D7A0A087X1C5 515 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 RPL21P46778 160 aaKnown RBP5.02□□□□□ -1.61
PCDH9-201ENST00000377861 LRRC74BQ6ZQY2 392 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 TRPV3Q8NET8 790 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 MCOLN3Q8TDD5 553 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 SPATA33Q96N06 139 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 CBSLP0DN79 551 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 CBSP35520 551 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 CATSPER4Q7RTX7 472 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 OR6B3Q8NGW1 331 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 TXLNGYQ9BZA5 131 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 SLC13A1Q9BZW2 595 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 NXF1Q9UBU9 619 aaKnown RBP5.02□□□□□ -1.61
PCDH9-201ENST00000377861 BCORL1Q5H9F3 1711 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 CAMK1GQ96NX5 476 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 MROH1Q8NDA8 1641 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 SLC16A4O15374 487 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 IRAK2O43187 625 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 SP100P23497 879 aaPredicted RBP5.02□□□□□ -1.61
PCDH9-201ENST00000377861 CYP4Z2PQ8N1L4 340 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 MARVELD2Q8N4S9 558 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 PTTG3PQ9NZH4 202 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 PCDH10Q9P2E7 1040 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 PTPRJQ12913 1337 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 REM1O75628 298 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 ALDH1A2O94788 518 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 DGKAP23743 735 aa5.02□□□□□ -1.61
PCDH9-201ENST00000377861 FSCN1Q16658 493 aaKnown RBP5.02□□□□□ -1.61
PCDH9-201ENST00000377861 PAGE2BQ5JRK9 111 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms