RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 SETD3Q86TU7 594 aaPredicted RBP19.47■□□□□ 0.71
CKS1B-203ENST00000368439 FAM172AQ8WUF8 416 aa19.47■□□□□ 0.71
CKS1B-203ENST00000368439 DNASE2BQ8WZ79 361 aa19.47■□□□□ 0.71
CKS1B-203ENST00000368439 FOXJ1Q92949 421 aa19.47■□□□□ 0.71
CKS1B-203ENST00000368439 PPARGC1AQ9UBK2 798 aaKnown RBP19.47■□□□□ 0.71
CKS1B-203ENST00000368439 NEU3Q9UQ49 428 aa19.47■□□□□ 0.71
CKS1B-203ENST00000368439 METTL12A8MUP2 240 aa19.46■□□□□ 0.71
CKS1B-203ENST00000368439 SRGAP2O75044 1071 aa19.46■□□□□ 0.71
CKS1B-203ENST00000368439 DNTTP04053 509 aa19.46■□□□□ 0.71
CKS1B-203ENST00000368439 VAV1P15498 845 aa19.46■□□□□ 0.71
CKS1B-203ENST00000368439 ACSL1P33121 698 aa19.46■□□□□ 0.71
CKS1B-203ENST00000368439 TPM4P67936 248 aa19.46■□□□□ 0.71
CKS1B-203ENST00000368439 DUOXA1Q1HG43 343 aa19.46■□□□□ 0.71
CKS1B-203ENST00000368439 DNAJC24Q6P3W2 148 aa19.46■□□□□ 0.71
CKS1B-203ENST00000368439 FAM124AQ86V42 546 aa19.46■□□□□ 0.71
CKS1B-203ENST00000368439 CCDC185Q8N715 623 aa19.46■□□□□ 0.71
CKS1B-203ENST00000368439 VCPIP1Q96JH7 1222 aa19.46■□□□□ 0.71
CKS1B-203ENST00000368439 PPP1R9BQ96SB3 815 aa19.46■□□□□ 0.71
CKS1B-203ENST00000368439 OSBPL2Q9H1P3 480 aa19.46■□□□□ 0.71
CKS1B-203ENST00000368439 PABPC3Q9H361 631 aaKnown RBP19.46■□□□□ 0.71
CKS1B-203ENST00000368439 CAPN10Q9HC96 672 aa19.46■□□□□ 0.71
CKS1B-203ENST00000368439 VPS28Q9UK41 221 aa19.46■□□□□ 0.71
CKS1B-203ENST00000368439 A0A0D9SEW6 157 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 FAM72CH0Y354 149 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 DDX3XO00571 662 aaKnown RBP eCLIP19.45■□□□□ 0.75e-15■■■□□ 17.2
CKS1B-203ENST00000368439 CCP110O43303 1012 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 ATP9BO43861 1147 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 RHOCP08134 193 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 MAOBP27338 520 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 ZNF143P52747 638 aaPredicted RBP19.45■□□□□ 0.7
CKS1B-203ENST00000368439 UBASH3AP57075 661 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 OGDHQ02218 1023 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 FAM72AQ5TYM5 149 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 DCAF12L1Q5VU92 463 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 FAM72DQ6L9T8 149 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 TFAP2DQ7Z6R9 452 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 FAM72BQ86X60 149 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 DNAAF5Q86Y56 855 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 STK40Q8N2I9 435 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 CEP76Q8TAP6 659 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 NTAN1Q96AB6 310 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 MCEEQ96PE7 176 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 ZYG11BQ9C0D3 744 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 OR12D3Q9UGF7 316 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 SERGEFQ9UGK8 458 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 SCML1Q9UN30 329 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 SLC6A14Q9UN76 642 aa19.45■□□□□ 0.7
CKS1B-203ENST00000368439 CNOT1A5YKK6 2376 aaKnown RBP19.45■□□□□ 0.7
CKS1B-203ENST00000368439 ASCC3Q8N3C0 2202 aaKnown RBP19.45■□□□□ 0.7
CKS1B-203ENST00000368439 SPTBN2O15020 2390 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 A0A1W2PQJ5 194 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 C4orf47A7E2U8 309 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 C10orf142B7Z368 130 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 SNAP91O60641 907 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 SERPINF2P08697 491 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 SKILP12757 684 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 SCAPQ12770 1279 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 CST6Q15828 149 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 ARL13BQ3SXY8 428 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 HGSNATQ68CP4 663 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 PLEKHA7Q6IQ23 1121 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 PPP1R2P3Q6NXS1 205 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 USP30Q70CQ3 517 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 MMAAQ8IVH4 418 aaKnown RBP19.44■□□□□ 0.7
CKS1B-203ENST00000368439 SH2D3CQ8N5H7 860 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 C1orf216Q8TAB5 229 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 NUSAP1Q9BXS6 441 aaKnown RBP19.44■□□□□ 0.7
CKS1B-203ENST00000368439 MUC3BQ9H195 1237 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 PCED1AQ9H1Q7 454 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 C6orf106Q9H6K1 298 aaPredicted RBP19.44■□□□□ 0.7
CKS1B-203ENST00000368439 FSCN3Q9NQT6 498 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 VPS51Q9UID3 782 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 SLC25A13Q9UJS0 675 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 HS3ST2Q9Y278 367 aa19.44■□□□□ 0.7
CKS1B-203ENST00000368439 MED19A0JLT2 244 aaPredicted RBP19.43■□□□□ 0.7
CKS1B-203ENST00000368439 ILVBLA1L0T0 632 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 TMCO5BA8MYB1 307 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 GOLGA6L19H0YKK7 550 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 MID1O15344 667 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 MT-CO1P00395 513 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 GZMAP12544 262 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 ENGP17813 658 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 OR1E1P30953 314 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 NNMTP40261 264 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 FOXK2Q01167 660 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 KLHL30Q0D2K2 578 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 MAMLD1Q13495 774 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 ELAVL3Q14576 367 aaKnown RBP19.43■□□□□ 0.7
CKS1B-203ENST00000368439 DLG2Q15700 870 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 TTC31Q49AM3 519 aaPredicted RBP19.43■□□□□ 0.7
CKS1B-203ENST00000368439 WDR45BQ5MNZ6 344 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 SYCP2LQ5T4T6 812 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 C6orf118Q5T5N4 469 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 RABEPKQ7Z6M1 372 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 NLRP14Q86W24 1093 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 RGL4Q8IZJ4 473 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 DCAF4L2Q8NA75 395 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 BTBD1Q9H0C5 482 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 TMEM9BQ9NQ34 198 aa19.43■□□□□ 0.7
CKS1B-203ENST00000368439 NDFIP2Q9NV92 336 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms