RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 DNTTP04053 509 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 MAPK8P45983 427 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 CTU1Q7Z7A3 348 aaKnown RBP11.8□□□□□ -0.52
SYNE1-204ENST00000367248 ZNF333Q96JL9 665 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 MBOAT7Q96N66 472 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 NINJ2Q9NZG7 142 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 MDM4O15151 490 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 POLR2LP62875 67 aaKnown RBP11.8□□□□□ -0.52
SYNE1-204ENST00000367248 SMARCB1Q12824 385 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 SUGP1Q8IWZ8 645 aaKnown RBP11.8□□□□□ -0.52
SYNE1-204ENST00000367248 PRDM12Q9H4Q4 367 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 WARS2Q9UGM6 360 aaKnown RBP11.8□□□□□ -0.52
SYNE1-204ENST00000367248 PHTF1Q9UMS5 762 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 NAALADL1Q9UQQ1 740 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 RPTORQ8N122 1335 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 NUDT14O95848 222 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 RPL7AP62424 266 aaKnown RBP11.8□□□□□ -0.52
SYNE1-204ENST00000367248 IRF2BP2Q7Z5L9 587 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 HJURPQ8NCD3 748 aaPredicted RBP11.8□□□□□ -0.52
SYNE1-204ENST00000367248 OR10G6Q8NH81 332 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 SEZ6LQ9BYH1 1024 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 ZYG11BQ9C0D3 744 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 ANKZF1Q9H8Y5 726 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 ACTR8Q9H981 624 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 WDR41Q9HAD4 459 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 RIPK2O43353 540 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 CCNT2O60583 730 aaKnown RBP11.8□□□□□ -0.52
SYNE1-204ENST00000367248 TPBGLP0DKB5 382 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 SSTR1P30872 391 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 KRT20P35900 424 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 PGS1Q32NB8 556 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 TMEM63BQ5T3F8 832 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 KREMEN1Q96MU8 473 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 RSPH9Q9H1X1 276 aaPredicted RBP11.8□□□□□ -0.52
SYNE1-204ENST00000367248 CILPO75339 1184 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 MT-CO1P00395 513 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 GPM6BQ13491 265 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 FUT11Q495W5 492 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 LCLAT1Q6UWP7 414 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 ZNF670Q9BS34 389 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 RGS18Q9NS28 235 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 DNAJC8O75937 253 aaPredicted RBP11.79□□□□□ -0.52
SYNE1-204ENST00000367248 ERBB2P04626 1255 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 CLTBP09497 229 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 MAPK1P28482 360 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 MAP3K10Q02779 954 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 FBXW10Q5XX13 1052 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 C1orf127Q8N9H9 656 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 KCNV2Q8TDN2 545 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 HDAC7Q8WUI4 952 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 STX18Q9P2W9 335 aaKnown RBP11.79□□□□□ -0.52
SYNE1-204ENST00000367248 SNX8Q9Y5X2 465 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 ERCC2P18074 760 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 GPR1P46091 355 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 MBTD1Q05BQ5 628 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 PATL1Q86TB9 770 aaKnown RBP11.79□□□□□ -0.52
SYNE1-204ENST00000367248 B3GALT6Q96L58 329 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 TAS2R13Q9NYV9 303 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 MLNP12872 115 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 ALDH6A1Q02252 535 aaKnown RBP11.79□□□□□ -0.52
SYNE1-204ENST00000367248 ITGA9Q13797 1035 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 VSTM1Q6UX27 236 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 FAM9CQ8IZT9 166 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 TDRD5Q8NAT2 981 aaKnown RBP11.79□□□□□ -0.52
SYNE1-204ENST00000367248 SAE1Q9UBE0 346 aaPredicted RBP11.79□□□□□ -0.52
SYNE1-204ENST00000367248 BTNL10A8MVZ5 291 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 INPP4BO15327 924 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 CPSF4O95639 269 aaKnown RBP11.79□□□□□ -0.52
SYNE1-204ENST00000367248 CHI3L1P36222 383 aaPredicted RBP11.79□□□□□ -0.52
SYNE1-204ENST00000367248 RAD23BP54727 409 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 SKOR1P84550 965 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 SPANXN3Q5MJ09 141 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 ZNF296Q8WUU4 475 aaPredicted RBP11.79□□□□□ -0.52
SYNE1-204ENST00000367248 DACH2Q96NX9 599 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 ELOVL6Q9H5J4 265 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 C1QTNF3-AMACRE9PGA6 284 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 F8W810 466 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 SERPINH1P50454 418 aaKnown RBP11.79□□□□□ -0.52
SYNE1-204ENST00000367248 NEPROQ6NW34 567 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 PARGQ86W56 976 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 ACOX2Q99424 681 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 ABCG8Q9H221 673 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 NRDE2Q9H7Z3 1164 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 CDV3Q9UKY7 258 aaKnown RBP11.79□□□□□ -0.52
SYNE1-204ENST00000367248 PPIEQ9UNP9 301 aaKnown RBP11.79□□□□□ -0.52
SYNE1-204ENST00000367248 ABCB1P08183 1280 aaPredicted RBP11.79□□□□□ -0.52
SYNE1-204ENST00000367248 PIRTP0C851 137 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 NFKB1P19838 968 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 ACLYP53396 1101 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 CDK16Q00536 496 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 PTPN20Q4JDL3 420 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 PRSS55Q6UWB4 352 aaPredicted RBP11.79□□□□□ -0.52
SYNE1-204ENST00000367248 PRPF39Q86UA1 669 aaKnown RBP11.79□□□□□ -0.52
SYNE1-204ENST00000367248 LHX5Q9H2C1 402 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 SRRDQ9UH36 339 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 PADI4Q9UM07 663 aa11.79□□□□□ -0.52
SYNE1-204ENST00000367248 CTPS1P17812 591 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 CDC25CP30307 473 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 CXorf40BQ96DE9 158 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms