RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 PLD4Q96BZ4 506 aa8.8□□□□□ -1
HMGB1P39-201ENST00000366304 DUSP16Q9BY84 665 aa8.8□□□□□ -1
HMGB1P39-201ENST00000366304 APOBEC3GQ9HC16 384 aaKnown RBP8.8□□□□□ -1
HMGB1P39-201ENST00000366304 KIAA1586Q9HCI6 787 aa8.8□□□□□ -1
HMGB1P39-201ENST00000366304 FZD3Q9NPG1 666 aa8.8□□□□□ -1
HMGB1P39-201ENST00000366304 KLHL11Q9NVR0 708 aa8.8□□□□□ -1
HMGB1P39-201ENST00000366304 FBXO2Q9UK22 296 aaPredicted RBP8.8□□□□□ -1
HMGB1P39-201ENST00000366304 ERVW-1Q9UQF0 538 aa8.8□□□□□ -1
HMGB1P39-201ENST00000366304 CLIC4Q9Y696 253 aa8.8□□□□□ -1
HMGB1P39-201ENST00000366304 CELSR2Q9HCU4 2923 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 CPED1A4D0V7 1026 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 RNF103O00237 685 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 PLRG1O43660 514 aaKnown RBP8.79□□□□□ -1
HMGB1P39-201ENST00000366304 TBL1XO60907 577 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 RNASEH1O60930 286 aaKnown RBP8.79□□□□□ -1
HMGB1P39-201ENST00000366304 KIF20AO95235 890 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 THEGLP0DJG4 465 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 C5AR1P21730 350 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 MZF1P28698 734 aaPredicted RBP8.79□□□□□ -1
HMGB1P39-201ENST00000366304 SLC5A2P31639 672 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 CCR10P46092 362 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 INCA1Q0VD86 236 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 SFSWAPQ12872 951 aaKnown RBP8.79□□□□□ -1
HMGB1P39-201ENST00000366304 BIRC3Q13489 604 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 SGO2Q562F6 1265 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 TPRG1LQ5T0D9 272 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 ADGRF1Q5T601 910 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 PIK3R6Q5UE93 754 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 AGBL4Q5VU57 503 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 EFL1Q7Z2Z2 1120 aaKnown RBP8.79□□□□□ -1
HMGB1P39-201ENST00000366304 B3GNT8Q7Z7M8 397 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 TADA2BQ86TJ2 420 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 UNC93AQ86WB7 457 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 TRIM69Q86WT6 500 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 NELFCDQ8IXH7 590 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 APCDD1Q8J025 514 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 XXYLT1Q8NBI6 393 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 PARD3BQ8TEW8 1205 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 EDEM1Q92611 657 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 CCDC97Q96F63 343 aaPredicted RBP8.79□□□□□ -1
HMGB1P39-201ENST00000366304 KLHDC7BQ96G42 594 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 ABCG4Q9H172 646 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 NLGN3Q9NZ94 848 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 STIM2Q9P246 746 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 KLF15Q9UIH9 416 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 CSMD1Q96PZ7 3565 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 DOCK9Q9BZ29 2069 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 ITIH6Q6UXX5 1313 aa8.79□□□□□ -1
HMGB1P39-201ENST00000366304 ICE1Q9Y2F5 2266 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.78□□□□□ -1
HMGB1P39-201ENST00000366304 TARSL2A2RTX5 802 aaKnown RBP8.78□□□□□ -1
HMGB1P39-201ENST00000366304 SCAMP1O15126 338 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 ASS1P00966 412 aaKnown RBP8.78□□□□□ -1
HMGB1P39-201ENST00000366304 IL1BP01584 269 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 ITGA2BP08514 1039 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 HGFP14210 728 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 CLDN2P57739 230 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 RPS24P62847 133 aaKnown RBP8.78□□□□□ -1
HMGB1P39-201ENST00000366304 CNTN1Q12860 1018 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 OVGP1Q12889 678 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 ZNF177Q13360 481 aaPredicted RBP8.78□□□□□ -1
HMGB1P39-201ENST00000366304 STAT4Q14765 748 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 LINC01559Q495D7 138 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 PITRM1Q5JRX3 1037 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 PM20D1Q6GTS8 502 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 XKR5Q6UX68 686 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 GCNT7Q6ZNI0 430 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 RBM44Q6ZP01 1051 aaKnown RBP8.78□□□□□ -1
HMGB1P39-201ENST00000366304 RSRC2Q7L4I2 434 aaKnown RBP8.78□□□□□ -1
HMGB1P39-201ENST00000366304 PRPF39Q86UA1 669 aaKnown RBP8.78□□□□□ -1
HMGB1P39-201ENST00000366304 PIGZQ86VD9 579 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 FIBINQ8TAL6 211 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 FRS2Q8WU20 508 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 RPL10LQ96L21 214 aaKnown RBP8.78□□□□□ -1
HMGB1P39-201ENST00000366304 ZSCAN31Q96LW9 406 aaPredicted RBP8.78□□□□□ -1
HMGB1P39-201ENST00000366304 CDK5RAP1Q96SZ6 601 aaKnown RBP8.78□□□□□ -1
HMGB1P39-201ENST00000366304 ARHGAP9Q9BRR9 750 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 SLC25A18Q9H1K4 315 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 GEMIN8Q9NWZ8 242 aaKnown RBP8.78□□□□□ -1
HMGB1P39-201ENST00000366304 MAP10Q9P2G4 905 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 STRIP2Q9ULQ0 834 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 SRPK3Q9UPE1 567 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 PLAAQ9Y263 795 aa8.78□□□□□ -1
HMGB1P39-201ENST00000366304 EDDM13A0A1B0GTR0 161 aa8.77□□□□□ -1.01
HMGB1P39-201ENST00000366304 YJEFN3A6XGL0 299 aa8.77□□□□□ -1.01
HMGB1P39-201ENST00000366304 E7ENQ6 273 aa8.77□□□□□ -1.01
HMGB1P39-201ENST00000366304 PRAMEF26H0Y7S4 382 aa8.77□□□□□ -1.01
HMGB1P39-201ENST00000366304 SLC31A1O15431 190 aa8.77□□□□□ -1.01
HMGB1P39-201ENST00000366304 CLSTN1O94985 981 aa8.77□□□□□ -1.01
HMGB1P39-201ENST00000366304 GJB6O95452 261 aa8.77□□□□□ -1.01
HMGB1P39-201ENST00000366304 IGLV3-27P01718 113 aa8.77□□□□□ -1.01
HMGB1P39-201ENST00000366304 RNF224P0DH78 156 aa8.77□□□□□ -1.01
HMGB1P39-201ENST00000366304 CD58P19256 250 aa8.77□□□□□ -1.01
HMGB1P39-201ENST00000366304 POU3F2P20265 443 aaPredicted RBP8.77□□□□□ -1.01
HMGB1P39-201ENST00000366304 HARS2P49590 506 aaKnown RBP8.77□□□□□ -1.01
HMGB1P39-201ENST00000366304 TKTL1P51854 596 aa8.77□□□□□ -1.01
HMGB1P39-201ENST00000366304 SH3BP2P78314 561 aa8.77□□□□□ -1.01
HMGB1P39-201ENST00000366304 FZD2Q14332 565 aa8.77□□□□□ -1.01
HMGB1P39-201ENST00000366304 ZNF284Q2VY69 593 aa8.77□□□□□ -1.01
HMGB1P39-201ENST00000366304 ZACNQ401N2 412 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms