RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 DDX39BQ13838 428 aaKnown RBP8.58□□□□□ -1.04
HMGB1-203ENST00000341423 KCNJ12Q14500 433 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 TCHHL1Q5QJ38 904 aaPredicted RBP8.58□□□□□ -1.04
HMGB1-203ENST00000341423 ARHGAP40Q5TG30 622 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 MBLAC2Q68D91 279 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 TRAPPC11Q7Z392 1133 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 TBCDQ9BTW9 1192 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 SLC39A1Q9NY26 324 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 KPNA5O15131 536 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 F2P00734 622 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 SLC8A1P32418 973 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 SEPHS1P49903 392 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 AFF3P51826 1226 aaKnown RBP8.58□□□□□ -1.04
HMGB1-203ENST00000341423 PPP1R15BQ5SWA1 713 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 SERINC5Q86VE9 423 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 DCP2Q8IU60 420 aaKnown RBP8.58□□□□□ -1.04
HMGB1-203ENST00000341423 SYT12Q8IV01 421 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 SCUBE3Q8IX30 993 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 AGBL5Q8NDL9 886 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 GRPEL1Q9HAV7 217 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 NT5MQ9NPB1 228 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 FBXL5Q9UKA1 691 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 ASF1AQ9Y294 204 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 AKR1B15C9JRZ8 316 aaPredicted RBP8.58□□□□□ -1.04
HMGB1-203ENST00000341423 TRDMT1O14717 391 aaKnown RBP8.58□□□□□ -1.04
HMGB1-203ENST00000341423 FLRT2O43155 660 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 RFPL2O75678 378 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 STBD1O95210 358 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 OR4Q2P0C623 313 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 TKTP29401 623 aaKnown RBP8.58□□□□□ -1.04
HMGB1-203ENST00000341423 ZBED6P86452 979 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 PTK6Q13882 451 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 LPIN1Q14693 890 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 UGP2Q16851 508 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 DCAF12Q5T6F0 453 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 ICE2Q659A1 982 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 SH3RF1Q7Z6J0 888 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 PRR7Q8TB68 274 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 AGAP3Q96P47 875 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 NEK6Q9HC98 313 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 PRDM6Q9NQX0 595 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 MAN2B2Q9Y2E5 1009 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 NFE2L3Q9Y4A8 694 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 WASF2Q9Y6W5 498 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 TEX28O15482 410 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 CD6P30203 668 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 NUBP1P53384 320 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 ITGADQ13349 1161 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 GSTA3Q16772 222 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 LEXMQ3ZCV2 418 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 ATP13A5Q4VNC0 1218 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 GLE1Q53GS7 698 aaKnown RBP8.57□□□□□ -1.04
HMGB1-203ENST00000341423 CBWD3Q5JTY5 395 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 CBWD5Q5RIA9 395 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 SH2D4BQ5SQS7 431 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 SLFN11Q7Z7L1 901 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 ZSCAN30Q86W11 494 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 RMDN2Q96LZ7 410 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 HERC2P3Q9BVR0 1158 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 SRMSQ9H3Y6 488 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 TMEM8AQ9HCN3 771 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 PNPLA8Q9NP80 782 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 ACAD8Q9UKU7 415 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 ZDBF2Q9HCK1 2354 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 A8MX80 341 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 HGSO14964 777 aaPredicted RBP8.57□□□□□ -1.04
HMGB1-203ENST00000341423 TRAPPC6AO75865 159 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 CST5P28325 142 aaPredicted RBP8.57□□□□□ -1.04
HMGB1-203ENST00000341423 PBX2P40425 430 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 CTBP2P56545 445 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 SPDYAQ5MJ70 313 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 GPAT2Q6NUI2 795 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 STOX1Q6ZVD7 989 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 HNRNPLLQ8WVV9 542 aaKnown RBP8.57□□□□□ -1.04
HMGB1-203ENST00000341423 TMEM176AQ96HP8 235 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 LMLNQ96KR4 655 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 QRFPRQ96P65 431 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 GBP5Q96PP8 586 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 HES7Q9BYE0 225 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 TRIM31Q9BZY9 425 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 RNF19AQ9NV58 838 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 SMARCAL1Q9NZC9 954 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 C2CD2Q9Y426 696 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 OR5K4A6NMS3 321 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 PDXKO00764 312 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 SUPT3HO75486 399 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 NPR3P17342 541 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 CCKBRP32239 447 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 MSH2P43246 934 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 GNPDA1P46926 289 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 ROR1Q01973 937 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 ITGA9Q13797 1035 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 BMPR2Q13873 1038 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 SF1Q15637 639 aaKnown RBP8.57□□□□□ -1.04
HMGB1-203ENST00000341423 RSPO2Q6UXX9 243 aaPredicted RBP8.57□□□□□ -1.04
HMGB1-203ENST00000341423 TBC1D1Q86TI0 1168 aaPredicted RBP8.57□□□□□ -1.04
HMGB1-203ENST00000341423 LINC00523Q86TU6 105 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 PLD4Q96BZ4 506 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 FER1L6-AS2Q96M78 137 aa8.57□□□□□ -1.04
HMGB1-203ENST00000341423 PHF12Q96QT6 1004 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms