RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 BDP1A6H8Y1 2624 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 CTAGE9A4FU28 777 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 RASA4BC9J798 803 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 RASA4O43374 803 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 APODP05090 189 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 ACVRL1P37023 503 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 PLK1P53350 603 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 GBE1Q04446 702 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 GRSF1Q12849 480 aaKnown RBP eCLIP22.72■■□□□ 1.23
SDC3-202ENST00000339394 PARP15Q460N3 678 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 PITRM1Q5JRX3 1037 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 SEL1L2Q5TEA6 688 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 SYT10Q6XYQ8 523 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 ARHGEF2Q92974 986 aaKnown RBP22.72■■□□□ 1.23
SDC3-202ENST00000339394 SNX12Q9UMY4 172 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 F5P12259 2224 aa22.71■■□□□ 1.23
SDC3-202ENST00000339394 MFSD11O43934 449 aa22.71■■□□□ 1.23
SDC3-202ENST00000339394 DRD1P21728 446 aa22.71■■□□□ 1.23
SDC3-202ENST00000339394 SIGLEC14Q08ET2 396 aa22.71■■□□□ 1.23
SDC3-202ENST00000339394 DMC1Q14565 340 aa22.71■■□□□ 1.23
SDC3-202ENST00000339394 PAPD7Q5XG87 772 aaKnown RBP22.71■■□□□ 1.23
SDC3-202ENST00000339394 FSTL4Q6MZW2 842 aa22.71■■□□□ 1.23
SDC3-202ENST00000339394 NUDT18Q6ZVK8 323 aa22.71■■□□□ 1.23
SDC3-202ENST00000339394 WFIKKN2Q8TEU8 576 aa22.71■■□□□ 1.23
SDC3-202ENST00000339394 EZH1Q92800 747 aaPredicted RBP22.71■■□□□ 1.23
SDC3-202ENST00000339394 TTC28Q96AY4 2481 aa22.71■■□□□ 1.23
SDC3-202ENST00000339394 HMCESQ96FZ2 354 aa22.71■■□□□ 1.23
SDC3-202ENST00000339394 OSBPL9Q96SU4 736 aa22.71■■□□□ 1.23
SDC3-202ENST00000339394 SPON2Q9BUD6 331 aa22.71■■□□□ 1.23
SDC3-202ENST00000339394 DTLQ9NZJ0 730 aa22.71■■□□□ 1.23
SDC3-202ENST00000339394 SAE1Q9UBE0 346 aaPredicted RBP22.71■■□□□ 1.23
SDC3-202ENST00000339394 NDRG2Q9UN36 371 aaKnown RBP22.71■■□□□ 1.23
SDC3-202ENST00000339394 HEY1Q9Y5J3 304 aa22.71■■□□□ 1.23
SDC3-202ENST00000339394 K7EQS6 105 aa22.7■■□□□ 1.22
SDC3-202ENST00000339394 TJP3O95049 919 aa22.7■■□□□ 1.22
SDC3-202ENST00000339394 MAP3K6O95382 1288 aa22.7■■□□□ 1.22
SDC3-202ENST00000339394 EGFP01133 1207 aa22.7■■□□□ 1.22
SDC3-202ENST00000339394 ETFBP38117 255 aa22.7■■□□□ 1.22
SDC3-202ENST00000339394 PAPOLAP51003 745 aaKnown RBP22.7■■□□□ 1.22
SDC3-202ENST00000339394 SLC10A2Q12908 348 aaPredicted RBP22.7■■□□□ 1.22
SDC3-202ENST00000339394 MBLAC2Q68D91 279 aa22.7■■□□□ 1.22
SDC3-202ENST00000339394 IL31Q6EBC2 164 aa22.7■■□□□ 1.22
SDC3-202ENST00000339394 BBS12Q6ZW61 710 aa22.7■■□□□ 1.22
SDC3-202ENST00000339394 ACE2Q9BYF1 805 aaPredicted RBP22.7■■□□□ 1.22
SDC3-202ENST00000339394 CIPCQ9C0C6 399 aa22.7■■□□□ 1.22
SDC3-202ENST00000339394 ATP13A1Q9HD20 1204 aa22.7■■□□□ 1.22
SDC3-202ENST00000339394 ELOVL2Q9NXB9 296 aa22.7■■□□□ 1.22
SDC3-202ENST00000339394 KANSL1LA0AUZ9 987 aa22.69■■□□□ 1.22
SDC3-202ENST00000339394 DFFAO00273 331 aa22.69■■□□□ 1.22
SDC3-202ENST00000339394 ALADP13716 330 aa22.69■■□□□ 1.22
SDC3-202ENST00000339394 NPNTQ6UXI9 565 aa22.69■■□□□ 1.22
SDC3-202ENST00000339394 CCDC33Q8N5R6 958 aa22.69■■□□□ 1.22
SDC3-202ENST00000339394 COG1Q8WTW3 980 aa22.69■■□□□ 1.22
SDC3-202ENST00000339394 TTC17Q96AE7 1141 aa22.69■■□□□ 1.22
SDC3-202ENST00000339394 PBKQ96KB5 322 aa22.69■■□□□ 1.22
SDC3-202ENST00000339394 C2orf49Q9BVC5 232 aaPredicted RBP22.69■■□□□ 1.22
SDC3-202ENST00000339394 MRPS17Q9Y2R5 130 aaKnown RBP22.69■■□□□ 1.22
SDC3-202ENST00000339394 ANTXRLA6NF34 631 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 ARHGAP42A6NI28 874 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 CBX4O00257 560 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 TIMM44O43615 452 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 CEP104O60308 925 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 SNAP91O60641 907 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 POLR2EP19388 210 aaKnown RBP22.68■■□□□ 1.22
SDC3-202ENST00000339394 TGM2P21980 687 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 GLDCP23378 1020 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 CASQ1P31415 396 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 TNFRSF4P43489 277 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 NR2C2P49116 596 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 KLF1Q13351 362 aaPredicted RBP22.68■■□□□ 1.22
SDC3-202ENST00000339394 SERINC3Q13530 473 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 CCINQ13939 588 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 EIF4HQ15056 248 aaKnown RBP22.68■■□□□ 1.22
SDC3-202ENST00000339394 ZNF354CQ86Y25 554 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 SLC13A5Q86YT5 568 aaPredicted RBP22.68■■□□□ 1.22
SDC3-202ENST00000339394 ZNF687Q8N1G0 1237 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 DCAF4L2Q8NA75 395 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 SORCS1Q8WY21 1168 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 LTB4R2Q9NPC1 389 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 STARD13Q9Y3M8 1113 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 MTF2Q9Y483 593 aaPredicted RBP22.68■■□□□ 1.22
SDC3-202ENST00000339394 NCOR1O75376 2440 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 DOCK4Q8N1I0 1966 aa22.68■■□□□ 1.22
SDC3-202ENST00000339394 TCRBV7S2A1N4TA0A589 114 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 PECAM1P16284 738 aaPredicted RBP22.67■■□□□ 1.22
SDC3-202ENST00000339394 PRLRP16471 622 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 TARSP26639 723 aaKnown RBP22.67■■□□□ 1.22
SDC3-202ENST00000339394 CCDC181Q5TID7 509 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 TRIM67Q6ZTA4 783 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 P3H4Q92791 437 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 ACDQ96AP0 544 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 HAUS1Q96CS2 278 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 FOXQ1Q9C009 403 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 TBC1D17Q9HA65 648 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 VPS51Q9UID3 782 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 APOC4-APOC2K7ER74 178 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 KDELR3O43731 214 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 APOC2P02655 101 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 ATP5BP06576 529 aaKnown RBP22.67■■□□□ 1.22
SDC3-202ENST00000339394 TCP1P17987 556 aaKnown RBP22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms