RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 GTF2A2P52657 109 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 KHDRBS2Q5VWX1 349 aaKnown RBP10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 FAM126BQ8IXS8 530 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 MARCH10Q8NA82 808 aaPredicted RBP10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 MAGEE1Q9HCI5 957 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 CNGB3Q9NQW8 809 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 VPS45Q9NRW7 570 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 LEF1Q9UJU2 399 aaPredicted RBP10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 CBX6O95503 412 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 SNRPB2P08579 225 aaKnown RBP10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 COX4I1P13073 169 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 CYP2A7P20853 494 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 PPIBP23284 216 aaKnown RBP10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 HAS1Q92839 578 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 NKD2Q969F2 451 aaPredicted RBP10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 SH3BP1Q9Y3L3 701 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 RGS5O15539 181 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 MICAL2O94851 1124 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 ARP10275 920 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 ZNF7P17097 686 aaPredicted RBP10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 ADSSP30520 456 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 EPC2Q52LR7 807 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 GLRA4Q5JXX5 417 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 SLC27A1Q6PCB7 646 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 BLOC1S5Q8TDH9 187 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 EBNA1BP2Q99848 306 aaKnown RBP10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 COL1A2P08123 1366 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 LAMB1P07942 1786 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 TRIM38O00635 465 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 CYB561D2O14569 222 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 SDE2Q6IQ49 451 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 ZCCHC8Q6NZY4 707 aaKnown RBP10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 OTOAQ7RTW8 1153 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 ACOT1Q86TX2 421 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 EXOSC4Q9NPD3 245 aaKnown RBP10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 hCG_1818297A0A087WSY0 165 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 A0A0B4J269 797 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 TM7SF2O76062 418 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 BAIAP3O94812 1187 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 TRUB2O95900 331 aaKnown RBP10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 MYL12AP19105 171 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 OGNP20774 298 aaKnown RBP10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 LRRC57Q8N9N7 239 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 MINDY2Q8NBR6 621 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 TNFRSF25Q93038 417 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 COLEC11Q9BWP8 271 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 PSMD13Q9UNM6 376 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 F8W810 466 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 MGRN1O60291 552 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 GJB6O95452 261 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 UMPSP11172 480 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 PPP3CCP48454 512 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 ATP6V0D1P61421 351 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 TRAF3Q13114 568 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 CYP1B1Q16678 543 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 TCHHL1Q5QJ38 904 aaPredicted RBP10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 BHLHE22Q8NFJ8 381 aaPredicted RBP10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 HPS4Q9NQG7 708 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 EIF2B3Q9NR50 452 aaKnown RBP10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 MBD2Q9UBB5 411 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 AFF4Q9UHB7 1163 aaKnown RBP10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 PLLPQ9Y342 182 aa10.46□□□□□ -0.74
CCDC88A-202ENST00000336838 QSOX1O00391 747 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 TPP1O14773 563 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 LTA4HP09960 611 aaKnown RBP10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 NOS2P35228 1153 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 PSMC6P62333 389 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 KCNT2Q6UVM3 1135 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 CLNKQ7Z7G1 428 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 FAM45AQ8TCE6 357 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 C18orf25Q96B23 403 aaPredicted RBP10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 GPRC5DQ9NZD1 345 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 INPP4BO15327 924 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 PSMD10O75832 226 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 GUCA1CO95843 209 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 LBPP18428 481 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 SSTR1P30872 391 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 BTKQ06187 659 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 VAC14Q08AM6 782 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 PDZK1Q5T2W1 519 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 TMC7Q7Z402 723 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 TMEM126BQ8IUX1 230 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 TBC1D21Q8IYX1 336 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 ATG16L2Q8NAA4 619 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 CDRT15Q96T59 188 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 APOL5Q9BWW9 433 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 CLEC4MQ9H2X3 399 aaPredicted RBP10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 XPNPEP3Q9NQH7 507 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 PEX1O43933 1283 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 DNAJB1P25685 340 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 TTPAP49638 278 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 RAB25P57735 213 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 NR6A1Q15406 480 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 ANKS6Q68DC2 871 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 POTEHQ6S545 545 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 CASP12Q6UXS9 341 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 CCDC81Q6ZN84 652 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 TSHZ1Q6ZSZ6 1077 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 KLHL28Q9NXS3 571 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 LNPEPQ9UIQ6 1025 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms