RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ITIH4Q14624 930 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 NPNTQ6UXI9 565 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 DSELQ8IZU8 1212 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 SYTL5Q8TDW5 730 aaPredicted RBP12.83□□□□□ -0.36
SDC3-201ENST00000336798 LRRC39Q96DD0 335 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 CDK5RAP1Q96SZ6 601 aaKnown RBP12.83□□□□□ -0.36
SDC3-201ENST00000336798 SLC9A7Q96T83 725 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 CORO1BQ9BR76 489 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 ANAPC2Q9UJX6 822 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 HSPA14Q0VDF9 509 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 ARMC12Q5T9G4 340 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 METTL7BQ6UX53 244 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 UBE2Q1Q7Z7E8 422 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 ZNF605Q86T29 641 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 SEMA4AQ9H3S1 761 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 KANSL3Q9P2N6 904 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 LOC100506127A0A0U1RQW1 187 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 FFAR3O14843 346 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 GPR42O15529 346 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 XYLBO75191 536 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 JAK1P23458 1154 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 ABL2P42684 1182 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 GPSM1Q86YR5 675 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 EGFL6Q8IUX8 553 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 OR10G6Q8NH81 332 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 ENKURQ8TC29 256 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 ZCCHC2Q9C0B9 1178 aaKnown RBP12.82□□□□□ -0.36
SDC3-201ENST00000336798 AASDHPPTQ9NRN7 309 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 SAE1Q9UBE0 346 aaPredicted RBP12.82□□□□□ -0.36
SDC3-201ENST00000336798 ARHGEF5Q12774 1597 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 ADGRA3Q8IWK6 1321 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 BCLAF3A2AJT9 711 aaKnown RBP12.82□□□□□ -0.36
SDC3-201ENST00000336798 HMGCRP04035 888 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 CYP4F2P78329 520 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 CYP4F3Q08477 520 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 RAP1GAP2Q684P5 730 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 RAET1GQ6H3X3 334 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 SKA1Q96BD8 255 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 OPTCQ9UBM4 332 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 A0A0B4J269 797 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 MRASO14807 208 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 PGAM1P18669 254 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 CNTFP26441 200 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 GPR156Q8NFN8 814 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 ADAM2Q99965 735 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 MRPS7Q9Y2R9 242 aaKnown RBP12.82□□□□□ -0.36
SDC3-201ENST00000336798 SH3GLB1Q9Y371 365 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 MTAPQ13126 283 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 AGMOQ6ZNB7 445 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 ITFG1Q8TB96 612 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 EMID1Q96A84 441 aaPredicted RBP12.82□□□□□ -0.36
SDC3-201ENST00000336798 TM6SF2Q9BZW4 377 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 ALG9Q9H6U8 611 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 ARHGAP28Q9P2N2 729 aa12.82□□□□□ -0.36
SDC3-201ENST00000336798 BCL10O95999 233 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 RARGP13631 454 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 ETS1P14921 441 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 CCL23P55773 120 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 MAD2L1Q13257 205 aaPredicted RBP12.81□□□□□ -0.36
SDC3-201ENST00000336798 PPP1R26Q5T8A7 1209 aaPredicted RBP12.81□□□□□ -0.36
SDC3-201ENST00000336798 MCOLN2Q8IZK6 566 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 ABRAQ8N0Z2 381 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 PCDH20Q8N6Y1 951 aaKnown RBP12.81□□□□□ -0.36
SDC3-201ENST00000336798 GORASP1Q9BQQ3 440 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 DCLK3Q9C098 648 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 ZNF518BQ9C0D4 1074 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 GANQ9H2C0 597 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 EPS8L2Q9H6S3 715 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 FANCEQ9HB96 536 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 NMRAL1Q9HBL8 299 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 PCDH12Q9NPG4 1184 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 CATSPERZQ9NTU4 200 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 STK39Q9UEW8 545 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 DPP7Q9UHL4 492 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 PRDM15P57071 1507 aaPredicted RBP12.81□□□□□ -0.36
SDC3-201ENST00000336798 SLCO1B7G3V0H7 640 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 RGS14O43566 566 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 ASNA1O43681 348 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 S100A3P33764 101 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 MMP13P45452 471 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 GSTM5P46439 218 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 SERPINH1P50454 418 aaKnown RBP12.81□□□□□ -0.36
SDC3-201ENST00000336798 RAPSNQ13702 412 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 NRF1Q16656 503 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 PFKFB4Q16877 469 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 KCTD19Q17RG1 926 aaPredicted RBP12.81□□□□□ -0.36
SDC3-201ENST00000336798 FAM171BQ6P995 826 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 SCIMPQ6UWF3 145 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 IQSEC2Q5JU85 1478 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 OR10H2O60403 315 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 CNTN2Q02246 1040 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 SNX32Q86XE0 403 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 DENND1CQ8IV53 801 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 GPR152Q8TDT2 470 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 REPS1Q96D71 796 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 PAIP1Q9H074 479 aaKnown RBP12.81□□□□□ -0.36
SDC3-201ENST00000336798 NEUROD4Q9HD90 331 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 HECW2Q9P2P5 1572 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 USP42Q9H9J4 1324 aaKnown RBP12.81□□□□□ -0.36
SDC3-201ENST00000336798 LRRC7Q96NW7 1537 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms