RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 MRGPRX1Q96LB2 322 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 CLIC6Q96NY7 704 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 SIGLEC12Q96PQ1 595 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 WDR77Q9BQA1 342 aaPredicted RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 C1QTNF2Q9BXJ5 285 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 RRN3Q9NYV6 651 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 LRP2BPQ9P2M1 347 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 SEL1LQ9UBV2 794 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 AMACRQ9UHK6 382 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 CDC42EP3Q9UKI2 254 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 FZD1Q9UP38 647 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 EXPH5Q8NEV8 1989 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 FITM1A5D6W6 292 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 TMEM232C9JQI7 657 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 OVOL3O00110 214 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 CSO75390 466 aaKnown RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 CNTN5O94779 1100 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 NBPF7P0C2Y1 421 aaPredicted RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 GJA1P17302 382 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 DNASE1P24855 282 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 PNLIPRP1P54315 467 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 VLDLRP98155 873 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 DSC2Q02487 901 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 DPTQ07507 201 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 MTM1Q13496 603 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 SNW1Q13573 536 aaKnown RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 DHX34Q14147 1143 aaKnown RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 QRICH1Q2TAL8 776 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 EDRF1Q3B7T1 1238 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 FOXD4L6Q3SYB3 417 aaPredicted RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 CES4AQ5XG92 561 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ATL3Q6DD88 541 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 PM20D1Q6GTS8 502 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 TTBK2Q6IQ55 1244 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ESRP1Q6NXG1 681 aaKnown RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 FOXD4L3Q6VB84 417 aaPredicted RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 C4orf50Q6ZRC1 276 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ATP11CQ8NB49 1132 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ERMNQ8TAM6 284 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 TMEM40Q8WWA1 233 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 SCG3Q8WXD2 468 aaKnown RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 RIN2Q8WYP3 895 aaPredicted RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 UBXN4Q92575 508 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ITFG2Q969R8 447 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 SHCBP1LQ9BZQ2 653 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 TGIF2Q9GZN2 237 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 SERHL2Q9H4I8 314 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 PDZD7Q9H5P4 517 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 MLXIPQ9HAP2 919 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 KIAA1586Q9HCI6 787 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 GP6Q9HCN6 339 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 AATFQ9NY61 560 aaKnown RBP eCLIP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 TFIP11Q9UBB9 837 aaKnown RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 SPASTQ9UBP0 616 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 FBXL5Q9UKA1 691 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 ODF2LQ9ULJ1 636 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 G3BP2Q9UN86 482 aaKnown RBP1.64□□□□□ -2.15
LINC00643-201ENST00000334389 RYR1P21817 5038 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 RYR2Q92736 4967 aa1.64□□□□□ -2.15
LINC00643-201ENST00000334389 C5orf63A6NC05 138 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 DDX39AO00148 427 aaKnown RBP1.63□□□□□ -2.15
LINC00643-201ENST00000334389 ZBTB24O43167 697 aaPredicted RBP1.63□□□□□ -2.15
LINC00643-201ENST00000334389 SH3BP5O60239 455 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 CDH16O75309 829 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 HMMRO75330 724 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 VPS4BO75351 444 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 RHOBTB3O94955 611 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 IGLV3-25P01717 112 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 IGHG3P01860 377 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 RHOXF2BP0C7M4 288 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 ATXN1LP0C7T5 689 aaKnown RBP1.63□□□□□ -2.15
LINC00643-201ENST00000334389 GHRP10912 638 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 HARSP12081 509 aaKnown RBP1.63□□□□□ -2.15
LINC00643-201ENST00000334389 NID1P14543 1247 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 CD38P28907 300 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 AVPR1AP37288 418 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 CACNB3P54284 484 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 EXOSC10Q01780 885 aaKnown RBP1.63□□□□□ -2.15
LINC00643-201ENST00000334389 DMTNQ08495 405 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 FOXO1Q12778 655 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 TCP10Q12799 353 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 G3BP1Q13283 466 aaKnown RBP eCLIP1.63□□□□□ -2.15
LINC00643-201ENST00000334389 GNL2Q13823 731 aaKnown RBP1.63□□□□□ -2.15
LINC00643-201ENST00000334389 CAPRIN1Q14444 709 aaKnown RBP1.63□□□□□ -2.15
LINC00643-201ENST00000334389 ASIC2Q16515 512 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 LY6KQ17RY6 165 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 DEFB113Q30KQ7 82 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 SV2CQ496J9 727 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 C2orf27AQ580R0 203 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 SHISA2Q6UWI4 295 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 LYPD4Q6UWN0 246 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 C6orf15Q6UXA7 325 aaPredicted RBP1.63□□□□□ -2.15
LINC00643-201ENST00000334389 RNF19BQ6ZMZ0 732 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 SPRED2Q7Z698 418 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 MCEMP1Q8IX19 187 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 NRSN1Q8IZ57 195 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 ADGRG2Q8IZP9 1017 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 NLGN4XQ8N0W4 816 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 IQCKQ8N0W5 287 aa1.63□□□□□ -2.15
LINC00643-201ENST00000334389 CMTR1Q8N1G2 835 aaKnown RBP1.63□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms