RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 FBXL19Q6PCT2 694 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 TMEM86AQ8N2M4 240 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 OMA1Q96E52 524 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 KLHL25Q9H0H3 589 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 ZFYVE1Q9HBF4 777 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 PARVBQ9HBI1 364 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.35□□□□□ -0.752e-8■□□□□ 10.2
CHD3-201ENST00000330494 TREHO43280 583 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 AVILO75366 819 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 DSG1Q02413 1049 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 TRIM16LQ309B1 348 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 SEMA4BQ9NPR2 832 aaPredicted RBP10.35□□□□□ -0.75
CHD3-201ENST00000330494 UXTQ9UBK9 157 aaPredicted RBP10.35□□□□□ -0.75
CHD3-201ENST00000330494 DDX20Q9UHI6 824 aaKnown RBP10.35□□□□□ -0.75
CHD3-201ENST00000330494 RAD51BO15315 384 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 XYLBO75191 536 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 MMP3P08254 477 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 CYP2A7P20853 494 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 TARBP2Q15633 366 aaKnown RBP10.35□□□□□ -0.75
CHD3-201ENST00000330494 C15orf52Q6ZUT6 534 aaKnown RBP10.35□□□□□ -0.75
CHD3-201ENST00000330494 LRRC8DQ7L1W4 858 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 NECAB2Q7Z6G3 386 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 FAR2Q96K12 515 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 SPACA7Q96KW9 195 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 OMDQ99983 421 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 NDEL1Q9GZM8 345 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 ALG9Q9H6U8 611 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 KRT84Q9NSB2 600 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 TAS2R13Q9NYV9 303 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 SPACA6W5XKT8 324 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 SLC15A5A6NIM6 579 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 SAC3D1A6NKF1 404 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 UBDO15205 165 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 TAS2R40P59535 323 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 LRRC55Q6ZSA7 311 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 CCDC103Q8IW40 242 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 HGH1Q9BTY7 390 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 TRAV19A0A0A6YYK7 116 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 C16orf96A6NNT2 1141 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 SERPINH1P50454 418 aaKnown RBP10.34□□□□□ -0.75
CHD3-201ENST00000330494 IFNLR1Q8IU57 520 aaPredicted RBP10.34□□□□□ -0.75
CHD3-201ENST00000330494 POLR1EQ9GZS1 481 aaKnown RBP10.34□□□□□ -0.75
CHD3-201ENST00000330494 PIK3C2AO00443 1686 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 MSI1O43347 362 aaKnown RBP10.34□□□□□ -0.75
CHD3-201ENST00000330494 CHKAP35790 457 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 CHRNB3Q05901 458 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 PFKFB4Q16877 469 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 SLC45A4Q5BKX6 768 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 MAB21L3Q8N8X9 362 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 LGMNQ99538 433 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 DPY30Q9C005 99 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 TAGLN3Q9UI15 199 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 MAGEB16A2A368 324 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 OPLAHO14841 1288 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 DLGAP3O95886 979 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 ERBB2P04626 1255 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 FASTKQ14296 549 aaKnown RBP10.34□□□□□ -0.75
CHD3-201ENST00000330494 MEA1Q16626 185 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 KBTBD12Q3ZCT8 623 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 WLSQ5T9L3 541 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 SCIMPQ6UWF3 145 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 BNIPLQ7Z465 357 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 NT5DC4Q86YG4 428 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 SLC22A9Q8IVM8 553 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 KATNAL2Q8IYT4 538 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 RGL4Q8IZJ4 473 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 CD99L2Q8TCZ2 262 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 TBCDQ9BTW9 1192 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 TCF7L2Q9NQB0 619 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 FAM105AQ9NUU6 356 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 PLK2Q9NYY3 685 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 OR56A5P0C7T3 313 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 CCNB1P14635 433 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 ZNF7P17097 686 aaPredicted RBP10.34□□□□□ -0.75
CHD3-201ENST00000330494 VHLP40337 213 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 NPY2RP49146 381 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 DUSP4Q13115 394 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 CNGA2Q16280 664 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 OTUD3Q5T2D3 398 aaPredicted RBP10.34□□□□□ -0.75
CHD3-201ENST00000330494 HECTD3Q5T447 861 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 CYP2R1Q6VVX0 501 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 MILR1Q7Z6M3 343 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 ROGDIQ9GZN7 287 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 TRHDEQ9UKU6 1024 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 MYH2Q9UKX2 1941 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 SF3B1O75533 1304 aaKnown RBP eCLIP10.34□□□□□ -0.754e-6■■■■■ 72.7
CHD3-201ENST00000330494 APOC4-APOC2K7ER74 178 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 MDM4O15151 490 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 SASH3O75995 380 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 APOC2P02655 101 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 NFKB1P19838 968 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 FGFR3P22607 806 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 S100A5P33763 92 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 NCKAP1LP55160 1127 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 VAC14Q08AM6 782 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 HSPA14Q0VDF9 509 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 GPSM1Q86YR5 675 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 FAM71AQ8IYT1 594 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 NRDE2Q9H7Z3 1164 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 AVENQ9NQS1 362 aaPredicted RBP10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms