RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 GOLGA8SH3BPF8 625 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 KMOO15229 486 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 MLYCDO95822 493 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 GUCY1A2P33402 732 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 NAMPTP43490 491 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 CDK8P49336 464 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 OASLQ15646 514 aaKnown RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SNRNP35Q16560 246 aaKnown RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 PTPN21Q16825 1174 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 PTPRNQ16849 979 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 DCAF6Q58WW2 860 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 FBXO31Q5XUX0 539 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 FBXW8Q8N3Y1 598 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 NKX2-3Q8TAU0 364 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ASB13Q8WXK3 278 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ZBTB10Q96DT7 871 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 DNAJC1Q96KC8 554 aaKnown RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SPATA5L1Q9BVQ7 753 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 TBC1D10AQ9BXI6 508 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SENP6Q9GZR1 1112 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 AFF4Q9UHB7 1163 aaKnown RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 MAP1BP46821 2468 aaKnown RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 AKAP10O43572 662 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 RORAP35398 523 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 MKRN4PQ13434 485 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 IER5Q5VY09 327 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 MACC1Q6ZN28 852 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 FAM71AQ8IYT1 594 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 NIPA2Q8N8Q9 360 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SHC3Q92529 594 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 CALN1Q9BXU9 219 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SP110Q9HB58 689 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 NPAP1Q9NZP6 1156 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 A0A0A0MRY4 1105 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 PIPSLA2A3N6 862 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 TRIM49D1C9J1S8 452 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ASMTLO95671 621 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 PDGFRAP16234 1089 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 PON1P27169 355 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ELP6Q0PNE2 266 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 KCTD2Q14681 263 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 TAF13Q15543 124 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ZDHHC20Q5W0Z9 365 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 PI16Q6UXB8 463 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 AKAP14Q86UN6 197 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ABRAQ8N0Z2 381 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 NAT14Q8WUY8 206 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 MRPL57Q9BQC6 102 aaKnown RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 TRIM51Q9BSJ1 452 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 HERC2P3Q9BVR0 1158 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 TRIM2Q9C040 744 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 NPHS2Q9NP85 383 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 AGPAT3Q9NRZ7 376 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 LEF1Q9UJU2 399 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 CDH9Q9ULB4 789 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SNX6Q9UNH7 406 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 NAALADL1Q9UQQ1 740 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 FMN2Q9NZ56 1722 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SNRNP200O75643 2136 aaKnown RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SPTBP11277 2137 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 EMSYQ7Z589 1322 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 DENND3A2RUS2 1198 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 MED24O75448 989 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 NR3C2P08235 984 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 GMFBP60983 142 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SLC7A5Q01650 507 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 FOLH1Q04609 750 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 IL23RQ5VWK5 629 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 STRADAQ7RTN6 431 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 ZC3H3Q8IXZ2 948 aaKnown RBP5.33□□□□□ -1.56
SCN1A-201ENST00000303395 IZUMO1Q8IYV9 350 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 AGAP11Q8TF27 550 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 HIST1H2AHQ96KK5 128 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 HIST1H2AJQ99878 128 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SH2D3AQ9BRG2 576 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 SPATA9Q9BWV2 254 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 EMC3Q9P0I2 261 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 RAB23Q9ULC3 237 aa5.33□□□□□ -1.56
SCN1A-201ENST00000303395 A0A1W2PRG6 482 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 CLOCKO15516 846 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SCELO95171 688 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 TOP3BO95985 862 aaKnown RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 S100A6P06703 90 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 AXLP30530 894 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 LRPAP1P30533 357 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SLCO1A2P46721 670 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 CLCN5P51795 746 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 RHAGQ02094 409 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ZC2HC1CQ53FD0 456 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SLC27A3Q5K4L6 730 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 LYPLAL1Q5VWZ2 237 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 OLFML2AQ68BL7 652 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 PAMR1Q6UXH9 720 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 C3orf62Q6ZUJ4 267 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ZDHHC13Q8IUH4 622 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF34Q8IZ26 560 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 TNFRSF25Q93038 417 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 QRFPRQ96P65 431 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 TRIT1Q9H3H1 467 aaKnown RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 KCTD5Q9NXV2 234 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms