RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 GJA1P17302 382 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 PSMA2P25787 234 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 SHMT1P34896 483 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 RARRES1P49788 294 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 COL14A1Q05707 1796 aaKnown RBP6.53□□□□□ -1.36
VPS35-201ENST00000299138 CDC16Q13042 620 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 DCAF12L1Q5VU92 463 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 PRR23BQ6ZRT6 265 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 SV2AQ7L0J3 742 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 RHPN2Q8IUC4 686 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 ARID3BQ8IVW6 561 aaPredicted RBP6.53□□□□□ -1.36
VPS35-201ENST00000299138 S100ZQ8WXG8 99 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 FAM149B1Q96BN6 582 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 BTBD3Q9Y2F9 522 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 TMX2Q9Y320 296 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 PLLPQ9Y342 182 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 PRR23AA6NEV1 266 aa6.52□□□□□ -1.36
VPS35-201ENST00000299138 DCDC2CA8MYV0 355 aa6.52□□□□□ -1.36
VPS35-201ENST00000299138 PSIP1O75475 530 aaKnown RBP6.52□□□□□ -1.36
VPS35-201ENST00000299138 NDUFB10O96000 172 aa6.52□□□□□ -1.36
VPS35-201ENST00000299138 RRM1P23921 792 aa6.52□□□□□ -1.36
VPS35-201ENST00000299138 NEK3P51956 506 aa6.52□□□□□ -1.36
VPS35-201ENST00000299138 BCAR1P56945 870 aa6.52□□□□□ -1.36
VPS35-201ENST00000299138 CDC42EP1Q00587 391 aa6.52□□□□□ -1.36
VPS35-201ENST00000299138 CNTN2Q02246 1040 aa6.52□□□□□ -1.36
VPS35-201ENST00000299138 RGS21Q2M5E4 152 aa6.52□□□□□ -1.36
VPS35-201ENST00000299138 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.52□□□□□ -1.36
VPS35-201ENST00000299138 MON1BQ7L1V2 547 aa6.52□□□□□ -1.36
VPS35-201ENST00000299138 ERI1Q8IV48 349 aaKnown RBP6.52□□□□□ -1.36
VPS35-201ENST00000299138 AADATQ8N5Z0 425 aa6.52□□□□□ -1.36
VPS35-201ENST00000299138 PCYOX1LQ8NBM8 494 aa6.52□□□□□ -1.36
VPS35-201ENST00000299138 FBXO36Q8NEA4 188 aa6.52□□□□□ -1.36
VPS35-201ENST00000299138 RTP4Q96DX8 246 aa6.52□□□□□ -1.36
VPS35-201ENST00000299138 CHST7Q9NS84 486 aa6.52□□□□□ -1.36
VPS35-201ENST00000299138 STYXL1Q9Y6J8 313 aa6.52□□□□□ -1.36
VPS35-201ENST00000299138 ASTN2O75129 1339 aaPredicted RBP6.52□□□□□ -1.37
VPS35-201ENST00000299138 AKAP11Q9UKA4 1901 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 FAM25EA8MYX2 175 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ENTPD5O75356 428 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 C8BP07358 591 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 PRKCHP24723 683 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 FOXN2P32314 431 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ARL4AP40617 200 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 NAMPTP43490 491 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 CDO1Q16878 200 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 TBRG1Q3YBR2 411 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 CBWD6Q4V339 395 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 C4orf46Q504U0 113 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 CBWD3Q5JTY5 395 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 CBWD5Q5RIA9 395 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 C4orf33Q8N1A6 199 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 PQLC1Q8N2U9 271 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ANKRD36BP1Q96IX9 119 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 HEMGNQ9BXL5 484 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 EPS8L2Q9H6S3 715 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 AS3MTQ9HBK9 375 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 AAASQ9NRG9 546 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 BBIP1A8MTZ0 92 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 E9PBE3 544 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 PLOD2O00469 737 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 APOL3O95236 402 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 NTRK1P04629 796 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 BPGMP07738 259 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 KCNJ1P48048 391 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 NR1D2Q14995 579 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 PDK3Q15120 406 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 C1orf94Q6P1W5 598 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ZNF613Q6PF04 617 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 AZIN2Q96A70 460 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 LENG9Q96B70 501 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 LRRC4CQ9HCJ2 640 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 MYRFQ9Y2G1 1151 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 POFUT2Q9Y2G5 429 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 IGLV3-22A0A075B6J6 115 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 SIGLEC16A6NMB1 481 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 PSMD11O00231 422 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ZNF23P17027 643 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 DDX5P17844 614 aaKnown RBP6.52□□□□□ -1.37
VPS35-201ENST00000299138 ME2P23368 584 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 HSF2Q03933 536 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 MGAT5Q09328 741 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 TRAF3Q13114 568 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 VEPH1Q14D04 833 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 DUOXA2Q1HG44 320 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 SLC35G1Q2M3R5 365 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ZNF280BQ86YH2 543 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 MIER2Q8N344 545 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ZNF614Q8N883 585 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 EML4Q9HC35 981 aaKnown RBP6.52□□□□□ -1.37
VPS35-201ENST00000299138 PICK1Q9NRD5 415 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ABCB10Q9NRK6 738 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 COPG2Q9UBF2 871 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ING4Q9UNL4 249 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 UBIAD1Q9Y5Z9 338 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 SF3B1O75533 1304 aaKnown RBP eCLIP6.52□□□□□ -1.372e-12■■■■■ 103.4
VPS35-201ENST00000299138 A0A1W2PQ72 361 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 DENND3A2RUS2 1198 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 RGSL1A5PLK6 1076 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 ZNF879B4DU55 563 aa6.52□□□□□ -1.37
VPS35-201ENST00000299138 E5RI56 91 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms