RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 ANKRD31Q8N7Z5 1873 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 INHBBP09529 407 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 MCF2P10911 925 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 GLRBP48167 497 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 ZBED5Q49AG3 693 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 CHSY3Q70JA7 882 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 ZBTB33Q86T24 672 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 NIPA2Q8N8Q9 360 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 CMASQ8NFW8 434 aaPredicted RBP13.75□□□□□ -0.21
SKA3-201ENST00000298260 NPLQ9BXD5 320 aaPredicted RBP13.75□□□□□ -0.21
SKA3-201ENST00000298260 STN1Q9H668 368 aaKnown RBP13.75□□□□□ -0.21
SKA3-201ENST00000298260 POU2F3Q9UKI9 436 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 GREB1LQ9C091 1923 aaPredicted RBP13.75□□□□□ -0.21
SKA3-201ENST00000298260 CCDC78A2IDD5 438 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 KRBA1A5PL33 1030 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 GOLGA8TH3BQL2 631 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 ZNF132P52740 706 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 TNK2Q07912 1038 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 DGKZQ13574 1117 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 SNRNP48Q6IEG0 339 aaKnown RBP13.75□□□□□ -0.21
SKA3-201ENST00000298260 C15orf52Q6ZUT6 534 aaKnown RBP13.75□□□□□ -0.21
SKA3-201ENST00000298260 LPGAT1Q92604 370 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 HPS1Q92902 700 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 TAMM41Q96BW9 452 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 WNK4Q96J92 1243 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 SNX27Q96L92 541 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 GATA5Q9BWX5 397 aaPredicted RBP13.75□□□□□ -0.21
SKA3-201ENST00000298260 GPRC5DQ9NZD1 345 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 GABBR1Q9UBS5 961 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 FBXO40Q9UH90 709 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 SLC27A5Q9Y2P5 690 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 TMED5Q9Y3A6 229 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 PCDHB12Q9Y5F1 795 aa13.75□□□□□ -0.21
SKA3-201ENST00000298260 C9IYK1 514 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 AKAP10O43572 662 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 BBOX1O75936 387 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 NCAM1P13591 858 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 GRK2P25098 689 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 BCAR1P56945 870 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 GBE1Q04446 702 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 DMPKQ09013 629 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 TAZQ16635 292 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 NHSL2Q5HYW2 709 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 IL31Q6EBC2 164 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 ZC3H12CQ9C0D7 883 aaKnown RBP13.74□□□□□ -0.21
SKA3-201ENST00000298260 POLR3FQ9H1D9 316 aaPredicted RBP13.74□□□□□ -0.21
SKA3-201ENST00000298260 MTMR10Q9NXD2 777 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 MOCS1Q9NZB8 636 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 ZDHHC2Q9UIJ5 367 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 SCAF8Q9UPN6 1271 aaKnown RBP13.74□□□□□ -0.21
SKA3-201ENST00000298260 PCDHA11Q9Y5I1 949 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 TK2O00142 265 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 MT-CO1P00395 513 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 MYL4P12829 197 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 MGAT1P26572 445 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 NKX2-5P52952 324 aaPredicted RBP13.74□□□□□ -0.21
SKA3-201ENST00000298260 PLCL1Q15111 1095 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 CYP4V2Q6ZWL3 525 aaPredicted RBP13.74□□□□□ -0.21
SKA3-201ENST00000298260 PGAM4Q8N0Y7 254 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 SPATA6LQ8N4H0 392 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 CBR4Q8N4T8 237 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 CYGBQ8WWM9 190 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 MASTLQ96GX5 879 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 TRIM8Q9BZR9 551 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 SNX15Q9NRS6 342 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 HMGXB4Q9UGU5 601 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 AP4E1Q9UPM8 1137 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 DGKBQ9Y6T7 804 aa13.74□□□□□ -0.21
SKA3-201ENST00000298260 TCAF2A6NFQ2 919 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 SOCS7O14512 581 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 WDR46O15213 610 aaKnown RBP13.73□□□□□ -0.21
SKA3-201ENST00000298260 SULT1C4O75897 302 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 NPR1P16066 1061 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 TCEA1P23193 301 aaKnown RBP13.73□□□□□ -0.21
SKA3-201ENST00000298260 IL4RP24394 825 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 OSTNP61366 133 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 SNRPFP62306 86 aaKnown RBP13.73□□□□□ -0.21
SKA3-201ENST00000298260 SF3B4Q15427 424 aaKnown RBP eCLIP13.73□□□□□ -0.21
SKA3-201ENST00000298260 FAM102AQ5T9C2 384 aaPredicted RBP13.73□□□□□ -0.21
SKA3-201ENST00000298260 RSBN1LQ6PCB5 846 aaPredicted RBP13.73□□□□□ -0.21
SKA3-201ENST00000298260 IGFN1Q86VF2 1251 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 CDR2LQ86X02 465 aaPredicted RBP13.73□□□□□ -0.21
SKA3-201ENST00000298260 UBA3Q8TBC4 463 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 TAAR1Q96RJ0 339 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 AGAP2Q99490 1192 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 MTG1Q9BT17 334 aaPredicted RBP13.73□□□□□ -0.21
SKA3-201ENST00000298260 MSTO1Q9BUK6 570 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 TDRD3Q9H7E2 651 aaKnown RBP13.73□□□□□ -0.21
SKA3-201ENST00000298260 RSAD1Q9HA92 442 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 CNOT6Q9ULM6 557 aaKnown RBP13.73□□□□□ -0.21
SKA3-201ENST00000298260 SLC8A2Q9UPR5 921 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 CDY2AQ9Y6F7 541 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 CDY1Q9Y6F8 540 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 SQORQ9Y6N5 450 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 PRORSD1PA6NEY8 169 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 LRRIQ4A6NIV6 560 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 G3V2L1 256 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 BMP10O95393 424 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 PIGNO95427 931 aa13.73□□□□□ -0.21
SKA3-201ENST00000298260 MATN1P21941 496 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms