RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 COG4Q9H9E3 785 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 NMRAL1Q9HBL8 299 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 HLA-DPA1P20036 260 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 CCR3P51677 355 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 DCAF12L1Q5VU92 463 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 ZNF554Q86TJ5 538 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 STK32CQ86UX6 486 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 ATPAF2Q8N5M1 289 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 SPATA16Q9BXB7 569 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 LGALS13Q9UHV8 139 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 M0QYT0 321 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 AGAP9Q5VTM2 703 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 TAF2Q6P1X5 1199 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 NTPCRQ9BSD7 190 aaKnown RBP15.65■□□□□ 0.1
SHH-201ENST00000297261 BRWD3Q6RI45 1802 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 hCG_1818297A0A087WSY0 165 aa15.64■□□□□ 0.1
SHH-201ENST00000297261 SLC15A5A6NIM6 579 aa15.64■□□□□ 0.1
SHH-201ENST00000297261 ARIH2O95376 493 aa15.64■□□□□ 0.1
SHH-201ENST00000297261 JCHAINP01591 159 aa15.64■□□□□ 0.1
SHH-201ENST00000297261 ATP5BP06576 529 aaKnown RBP15.64■□□□□ 0.1
SHH-201ENST00000297261 ITGAVP06756 1048 aa15.64■□□□□ 0.1
SHH-201ENST00000297261 AKAP5P24588 427 aa15.64■□□□□ 0.1
SHH-201ENST00000297261 PSMB9P28065 219 aa15.64■□□□□ 0.1
SHH-201ENST00000297261 NEK3P51956 506 aa15.64■□□□□ 0.1
SHH-201ENST00000297261 NAA20P61599 178 aa15.64■□□□□ 0.1
SHH-201ENST00000297261 CYP51A1Q16850 503 aa15.64■□□□□ 0.1
SHH-201ENST00000297261 RGS21Q2M5E4 152 aa15.64■□□□□ 0.1
SHH-201ENST00000297261 DCUN1D1Q96GG9 259 aa15.64■□□□□ 0.1
SHH-201ENST00000297261 AFF4Q9UHB7 1163 aaKnown RBP15.64■□□□□ 0.1
SHH-201ENST00000297261 TNFSF13BQ9Y275 285 aa15.64■□□□□ 0.1
SHH-201ENST00000297261 STXBP5LQ9Y2K9 1186 aa15.64■□□□□ 0.1
SHH-201ENST00000297261 ZSCAN9O15535 394 aaPredicted RBP15.64■□□□□ 0.09
SHH-201ENST00000297261 ETFBP38117 255 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 GRIA3P42263 894 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 JAM2P57087 298 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 CCDC153Q494R4 210 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 SGO1Q5FBB7 561 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.64■□□□□ 0.09
SHH-201ENST00000297261 ASB7Q9H672 318 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 NFICP08651 508 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 AQP4P55087 323 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 PEX6Q13608 980 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 LPIN1Q14693 890 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 NR1D2Q14995 579 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 FAM110CQ1W6H9 321 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 TAS2R42Q7RTR8 314 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 DLG3Q92796 817 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 MTG1Q9BT17 334 aaPredicted RBP15.64■□□□□ 0.09
SHH-201ENST00000297261 SLC4A5Q9BY07 1137 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 PREBQ9HCU5 417 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 SELENONQ9NZV5 590 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 C6orf203Q9P0P8 240 aaPredicted RBP15.64■□□□□ 0.09
SHH-201ENST00000297261 VANGL2Q9ULK5 521 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 DMTF1Q9Y222 760 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 MAGEC1O60732 1142 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 H2AFYO75367 372 aaKnown RBP15.64■□□□□ 0.09
SHH-201ENST00000297261 RGS20O76081 388 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 MYL4P12829 197 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 WASHC5Q12768 1159 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 ANKRD23Q86SG2 305 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 C10orf82Q8WW14 230 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 CASS4Q9NQ75 786 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 NDFIP2Q9NV92 336 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 ETNK2Q9NVF9 386 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 PSMD13Q9UNM6 376 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 GNEQ9Y223 722 aaKnown RBP15.64■□□□□ 0.09
SHH-201ENST00000297261 SH3GLB1Q9Y371 365 aa15.64■□□□□ 0.09
SHH-201ENST00000297261 THPOP40225 353 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 PSEN2P49810 448 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 MAP2K5Q13163 448 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 C15orf59Q2T9L4 293 aaPredicted RBP15.63■□□□□ 0.09
SHH-201ENST00000297261 C6orf52Q5T4I8 152 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 SPRYD7Q5W111 196 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 TERB1Q8NA31 727 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 TMEM176AQ96HP8 235 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 RNF145Q96MT1 663 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 XPNPEP3Q9NQH7 507 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 LRRC42Q9Y546 428 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 LINGO3P0C6S8 592 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 VDRP11473 427 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 PPARGP37231 505 aaPredicted RBP15.63■□□□□ 0.09
SHH-201ENST00000297261 TAF6P49848 677 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 NOMO3P69849 1222 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 SFSWAPQ12872 951 aaKnown RBP15.63■□□□□ 0.09
SHH-201ENST00000297261 RALGPS1Q5JS13 557 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 RSBN1Q5VWQ0 802 aaPredicted RBP15.63■□□□□ 0.09
SHH-201ENST00000297261 FAM47BQ8NA70 645 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 MAGEE2Q8TD90 523 aaPredicted RBP15.63■□□□□ 0.09
SHH-201ENST00000297261 FAR2Q96K12 515 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 SH3GL1Q99961 368 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.63■□□□□ 0.09
SHH-201ENST00000297261 TELO2Q9Y4R8 837 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 DYTNA2CJ06 578 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 RGSL1A5PLK6 1076 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 LDLRP01130 860 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 NUMBP49757 651 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 TRIM25Q14258 630 aaKnown RBP15.63■□□□□ 0.09
SHH-201ENST00000297261 KRT72Q14CN4 511 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 SLC27A1Q6PCB7 646 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 BBS12Q6ZW61 710 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 351.1 ms