RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 KCNMB4Q86W47 210 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 ULK2Q8IYT8 1036 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 MLPHQ9BV36 600 aaPredicted RBP16.98■□□□□ 0.31
VPS54-201ENST00000272322 WDR6Q9NNW5 1121 aaKnown RBP16.98■□□□□ 0.31
VPS54-201ENST00000272322 DLGAP2Q9P1A6 1054 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 SLC2A6Q9UGQ3 507 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 OTOFQ9HC10 1997 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 GLTPD2A6NH11 291 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.98■□□□□ 0.31
VPS54-201ENST00000272322 TSPAN8P19075 237 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 GP5P40197 560 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 SERPINB9P50453 376 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 MPP1Q00013 466 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 USP10Q14694 798 aaKnown RBP16.98■□□□□ 0.31
VPS54-201ENST00000272322 ANKRD20A4Q4UJ75 823 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 TAC4Q86UU9 113 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 MAPK15Q8TD08 544 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 EMID1Q96A84 441 aaPredicted RBP16.98■□□□□ 0.31
VPS54-201ENST00000272322 NUF2Q9BZD4 464 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 COPG2Q9UBF2 871 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 MORF4L1Q9UBU8 362 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 RGPD3A6NKT7 1758 aaPredicted RBP16.98■□□□□ 0.31
VPS54-201ENST00000272322 RGPD4Q7Z3J3 1758 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 SIP14410 1827 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 RBM47A0AV96 593 aaKnown RBP16.98■□□□□ 0.31
VPS54-201ENST00000272322 NEMP2A6NFY4 417 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 CIB2O75838 187 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 SLC4A1P02730 911 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 PNPLA4P41247 253 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 NAGLUP54802 743 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 TRIM32Q13049 653 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 ITGA7Q13683 1181 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 PSTKQ8IV42 348 aaKnown RBP16.98■□□□□ 0.31
VPS54-201ENST00000272322 C2orf69Q8N8R5 385 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 KCTD4Q8WVF5 259 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 C7orf26Q96N11 449 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 PANX3Q96QZ0 392 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 NDNQ99608 321 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 RRAGCQ9HB90 399 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 GDAP2Q9NXN4 497 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 STOML1Q9UBI4 398 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 PRG3Q9Y2Y8 225 aaPredicted RBP16.98■□□□□ 0.31
VPS54-201ENST00000272322 AK5Q9Y6K8 562 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 TNPO2O14787 897 aaKnown RBP16.97■□□□□ 0.31
VPS54-201ENST00000272322 SIN3BO75182 1162 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 DAB1O75553 588 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 SOAT2O75908 522 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 MPSTP25325 297 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 SERPINB6P35237 376 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 MPP3Q13368 585 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 GRM3Q14832 879 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 PDCD2Q16342 344 aaPredicted RBP16.97■□□□□ 0.31
VPS54-201ENST00000272322 SLC9B1Q4ZJI4 515 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 SPRYD7Q5W111 196 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 LRRTM3Q86VH5 581 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 SLC41A1Q8IVJ1 513 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 TRIM42Q8IWZ5 723 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 ZNF398Q8TD17 642 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 FBXO41Q8TF61 875 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 B3GALT6Q96L58 329 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 FRMD8Q9BZ67 464 aaPredicted RBP16.97■□□□□ 0.31
VPS54-201ENST00000272322 TAGLN3Q9UI15 199 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 PPM1HQ9ULR3 514 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 TMEM233B4DJY2 109 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 GLRA3O75311 464 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 TGDSO95455 350 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 ZNF865P0CJ78 1059 aaPredicted RBP16.97■□□□□ 0.31
VPS54-201ENST00000272322 TSHRP16473 764 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 FAM110CQ1W6H9 321 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 PPM1LQ5SGD2 360 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 ANO7Q6IWH7 933 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 TMEM154Q6P9G4 183 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 LRRC74BQ6ZQY2 392 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 HPS6Q86YV9 775 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 DEFB107AQ8IZN7 70 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 ZC3H15Q8WU90 426 aaKnown RBP16.97■□□□□ 0.31
VPS54-201ENST00000272322 OR52B2Q96RD2 323 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 LNPEPQ9UIQ6 1025 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 BRCA1P38398 1863 aaKnown RBP16.97■□□□□ 0.31
VPS54-201ENST00000272322 AURKAO14965 403 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 GCKP35557 465 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 GRIK1P39086 918 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 ZNF157P51786 506 aaPredicted RBP16.97■□□□□ 0.31
VPS54-201ENST00000272322 NIPAL4Q0D2K0 466 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 MAP2K5Q13163 448 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 TSNAXIP1Q2TAA8 658 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 WASHC2DQ5SRD0 308 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 KBTBD2Q8IY47 623 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 EXT2Q93063 718 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 COG4Q9H9E3 785 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 CHST12Q9NRB3 414 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 ABI2Q9NYB9 513 aaPredicted RBP16.97■□□□□ 0.31
VPS54-201ENST00000272322 DERAQ9Y315 318 aa16.97■□□□□ 0.31
VPS54-201ENST00000272322 DCLK1O15075 740 aa16.96■□□□□ 0.31
VPS54-201ENST00000272322 CNGA3Q16281 694 aa16.96■□□□□ 0.31
VPS54-201ENST00000272322 ARL13BQ3SXY8 428 aa16.96■□□□□ 0.31
VPS54-201ENST00000272322 CAPRIN2Q6IMN6 1127 aaKnown RBP16.96■□□□□ 0.31
VPS54-201ENST00000272322 GDF6Q6KF10 455 aaPredicted RBP16.96■□□□□ 0.31
VPS54-201ENST00000272322 ESRP1Q6NXG1 681 aaKnown RBP16.96■□□□□ 0.31
VPS54-201ENST00000272322 TMPRSS6Q8IU80 811 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms