RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 PLEKP08567 350 aaPredicted RBP4.39□□□□□ -1.71
VPS13C-202ENST00000261517 CNPP09543 421 aaKnown RBP4.39□□□□□ -1.71
VPS13C-202ENST00000261517 IRAK1P51617 712 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 MRPS22P82650 360 aaKnown RBP4.39□□□□□ -1.71
VPS13C-202ENST00000261517 TUSC3Q13454 348 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 R3HDM1Q15032 1099 aaKnown RBP4.39□□□□□ -1.71
VPS13C-202ENST00000261517 TSNQ15631 228 aaKnown RBP4.39□□□□□ -1.71
VPS13C-202ENST00000261517 CHI3L2Q15782 390 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 SH3D19Q5HYK7 790 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 RNF43Q68DV7 783 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 TMC3Q7Z5M5 1100 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 STRA8Q7Z7C7 330 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 DEPDC4Q8N2C3 294 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 DACT3Q96B18 629 aaPredicted RBP4.39□□□□□ -1.71
VPS13C-202ENST00000261517 KLHL4Q9C0H6 718 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 PRDM5Q9NQX1 630 aaPredicted RBP4.39□□□□□ -1.71
VPS13C-202ENST00000261517 PTPN1P18031 435 aaKnown RBP4.39□□□□□ -1.71
VPS13C-202ENST00000261517 CAPZA2P47755 286 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 MAPK11Q15759 364 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 LCLAT1Q6UWP7 414 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 SRLQ86TD4 932 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 TDRPQ86YL5 185 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 ACTL9Q8TC94 416 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 ACER1Q8TDN7 264 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 AENQ8WTP8 325 aaKnown RBP4.39□□□□□ -1.71
VPS13C-202ENST00000261517 CHAMP1Q96JM3 812 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 SHCBP1LQ9BZQ2 653 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 PNPLA8Q9NP80 782 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 STMN3Q9NZ72 180 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 TPRKBQ9Y3C4 175 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 GUCA1CO95843 209 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 IDO1P14902 403 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 RAB15P59190 212 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 SLC25A52Q3SY17 297 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 MDH1BQ5I0G3 518 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 C6orf10Q5SRN2 563 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 SCUBE1Q8IWY4 988 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 CCDC185Q8N715 623 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 COLGALT1Q8NBJ5 622 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 FBXO22Q8NEZ5 403 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 TTLQ8NG68 377 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 FKBP10Q96AY3 582 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 CBWD1Q9BRT8 395 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 TCF7L2Q9NQB0 619 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 TMEM161AQ9NX61 479 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 KIAA1522Q9P206 1035 aaPredicted RBP4.39□□□□□ -1.71
VPS13C-202ENST00000261517 RPS6KB2Q9UBS0 482 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 PRR23AA6NEV1 266 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 ZC3H12BQ5HYM0 836 aaKnown RBP4.38□□□□□ -1.71
VPS13C-202ENST00000261517 ZNF783Q6ZMS7 281 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 DCLK2Q8N568 766 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 MAB21L3Q8N8X9 362 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 FBXO36Q8NEA4 188 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 UHMK1Q8TAS1 419 aaKnown RBP4.38□□□□□ -1.71
VPS13C-202ENST00000261517 DCTN4Q9UJW0 460 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 ZNF232Q9UNY5 417 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 SATB2Q9UPW6 733 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 C5orf60A6NFR6 353 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 UBXN8O00124 270 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 PRMT5O14744 637 aaPredicted RBP4.38□□□□□ -1.71
VPS13C-202ENST00000261517 SNAP91O60641 907 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 STAU1O95793 577 aaKnown RBP4.38□□□□□ -1.71
VPS13C-202ENST00000261517 ACO1P21399 889 aaKnown RBP4.38□□□□□ -1.71
VPS13C-202ENST00000261517 HTR1BP28222 390 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 TRPC1P48995 793 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 RASA2Q15283 850 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 ZNF571Q7Z3V5 609 aaPredicted RBP4.38□□□□□ -1.71
VPS13C-202ENST00000261517 FBXO39Q8N4B4 442 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 ALLCQ8N6M5 410 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 SLC4A11Q8NBS3 891 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 EXT2Q93063 718 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 ERVW-1Q9UQF0 538 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 MRPS33Q9Y291 106 aaKnown RBP4.38□□□□□ -1.71
VPS13C-202ENST00000261517 A0A0G2JLL6 359 aaPredicted RBP4.38□□□□□ -1.71
VPS13C-202ENST00000261517 SLC12A8A0AV02 714 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 FAM196BA6NMK8 535 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 MEIS2O14770 477 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 NPC1O15118 1278 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 HS6ST1O60243 411 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 OTCP00480 354 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 MAGEA10P43363 369 aaPredicted RBP4.38□□□□□ -1.71
VPS13C-202ENST00000261517 HCAR3P49019 387 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 NDST1P52848 882 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 PTPN5P54829 565 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 RPL26P61254 145 aaKnown RBP4.38□□□□□ -1.71
VPS13C-202ENST00000261517 TCEAL1Q15170 157 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 ATP13A4Q4VNC1 1196 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 MPPE1Q53F39 396 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 ZNF572Q7Z3I7 529 aaPredicted RBP4.38□□□□□ -1.71
VPS13C-202ENST00000261517 SPATA19Q7Z5L4 167 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 PRRT2Q7Z6L0 340 aaPredicted RBP4.38□□□□□ -1.71
VPS13C-202ENST00000261517 RASGEF1CQ8N431 466 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 B3GALNT2Q8NCR0 500 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 PCDH18Q9HCL0 1135 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 NPHS2Q9NP85 383 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 FAM49BQ9NUQ9 324 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 C6orf203Q9P0P8 240 aaPredicted RBP4.38□□□□□ -1.71
VPS13C-202ENST00000261517 BCLAF3A2AJT9 711 aaKnown RBP4.38□□□□□ -1.71
VPS13C-202ENST00000261517 TTLL13PA6NNM8 815 aa4.38□□□□□ -1.71
VPS13C-202ENST00000261517 RIPK2O43353 540 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms