RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 NXNQ6DKJ4 435 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 CES5AQ6NT32 575 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 CFAP52Q8N1V2 620 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 SMG7Q92540 1137 aaKnown RBP11.84□□□□□ -0.51
VPS4A-201ENST00000254950 MTBPQ96DY7 904 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 CFAP97Q9P2B7 532 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 BACE2Q9Y5Z0 518 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 WDR27A2RRH5 827 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 TIMM44O43615 452 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 TBX18O95935 607 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 ATP6V1E2Q96A05 226 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 PLD4Q96BZ4 506 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 LUC7L3O95232 432 aaKnown RBP11.83□□□□□ -0.52
VPS4A-201ENST00000254950 HSPA4LO95757 839 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 FAAP100Q0VG06 881 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 FASTKD1Q53R41 847 aaKnown RBP11.83□□□□□ -0.52
VPS4A-201ENST00000254950 ZNF697Q5TEC3 545 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 NLRP9Q7RTR0 991 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 RNF135Q8IUD6 432 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 WDR75Q8IWA0 830 aaKnown RBP11.83□□□□□ -0.52
VPS4A-201ENST00000254950 RTL3Q8N8U3 475 aaKnown RBP11.83□□□□□ -0.52
VPS4A-201ENST00000254950 OR52K1Q8NGK4 314 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 SLCO2A1Q92959 643 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 ELMO2Q96JJ3 720 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 PEBP4Q96S96 227 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 TRIM56Q9BRZ2 755 aaKnown RBP11.83□□□□□ -0.52
VPS4A-201ENST00000254950 TRIM55Q9BYV6 548 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 MTRRQ9UBK8 725 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 C5orf60A6NFR6 353 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 TSHRP16473 764 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 PTPN2P17706 415 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 KRT4P19013 534 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 HCAR3P49019 387 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 RASSF2P50749 326 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 FAM189BP81408 668 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 IFT88Q13099 833 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 MPP3Q13368 585 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 PARP15Q460N3 678 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 SPANXN3Q5MJ09 141 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 ARL14EPQ8N8R7 260 aaPredicted RBP11.83□□□□□ -0.52
VPS4A-201ENST00000254950 HDAC11Q96DB2 347 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 PWWP2AQ96N64 755 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 CASD1Q96PB1 797 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 SLC2A13Q96QE2 648 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 FAM167BQ9BTA0 163 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 IL22Q9GZX6 179 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 SLC39A10Q9ULF5 831 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 PLA2G4CQ9UP65 541 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 VPS9D1Q9Y2B5 631 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 CPQQ9Y646 472 aa11.83□□□□□ -0.52
VPS4A-201ENST00000254950 HEATR9A2RTY3 570 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 ALOX15BO15296 676 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 GPC4O75487 556 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 CNTFP26441 200 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 RPS6KA2Q15349 733 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 MAP7D1Q3KQU3 841 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 HIBCHQ6NVY1 386 aaPredicted RBP11.82□□□□□ -0.52
VPS4A-201ENST00000254950 FAM171BQ6P995 826 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 KDM7AQ6ZMT4 941 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 LRRTM3Q86VH5 581 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 PGM2Q96G03 612 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 PAK6Q9NQU5 681 aaPredicted RBP11.82□□□□□ -0.52
VPS4A-201ENST00000254950 GRID1Q9ULK0 1009 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 IGSF6O95976 241 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 ABHD2P08910 425 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 DSC1Q08554 894 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 SCARA3Q6AZY7 606 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 RFWD3Q6PCD5 774 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 ANKRD33Q7Z3H0 272 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 LPCAT1Q8NF37 534 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 SEMA3CQ99985 751 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 GLOD4Q9HC38 313 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 IARS2Q9NSE4 1012 aaKnown RBP11.82□□□□□ -0.52
VPS4A-201ENST00000254950 NDFIP2Q9NV92 336 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 TMLHEQ9NVH6 421 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 DOCK3Q8IZD9 2030 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 ZWINTO95229 277 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 NUDT17P0C025 328 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 CCNCP24863 283 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 GPM6BQ13491 265 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 ZRANB3Q5FWF4 1079 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 GPRIN1Q7Z2K8 1008 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 NLRP14Q86W24 1093 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 CPT1BQ92523 772 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 DCUN1D1Q96GG9 259 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 CERS4Q9HA82 394 aa11.82□□□□□ -0.52
VPS4A-201ENST00000254950 A0A1B0GVM2 712 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 TCAF2A6NFQ2 919 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 GCATO75600 419 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 CD86P42081 329 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 MAPKAPK2P49137 400 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 MLLT6P55198 1093 aaPredicted RBP11.81□□□□□ -0.52
VPS4A-201ENST00000254950 CCSAPQ6IQ19 270 aaPredicted RBP11.81□□□□□ -0.52
VPS4A-201ENST00000254950 STRA8Q7Z7C7 330 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 CCNYL1Q8N7R7 359 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 PRCCQ92733 491 aaPredicted RBP11.81□□□□□ -0.52
VPS4A-201ENST00000254950 CCSER2Q9H7U1 834 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 INSL5Q9Y5Q6 135 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 F8W810 466 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 PYGLP06737 847 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 144.6 ms