RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 MPP2Q14168 576 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 TTC31Q49AM3 519 aaPredicted RBP8.89□□□□□ -0.99
VPS4B-201ENST00000238497 RWDD4Q6NW29 188 aaKnown RBP8.89□□□□□ -0.99
VPS4B-201ENST00000238497 DENND5BQ6ZUT9 1274 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 GAREM2Q75VX8 874 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 BMP8AQ7Z5Y6 402 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 ALYREFQ86V81 257 aaKnown RBP8.89□□□□□ -0.99
VPS4B-201ENST00000238497 CCDC185Q8N715 623 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 LEMD2Q8NC56 503 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 CSGALNACT1Q8TDX6 532 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 PSMG2Q969U7 264 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 SHDQ96IW2 340 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 TBCBQ99426 244 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 CNOT10Q9H9A5 744 aaKnown RBP8.89□□□□□ -0.99
VPS4B-201ENST00000238497 SLCO1B3Q9NPD5 702 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 KRT82Q9NSB4 513 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 WNT16Q9UBV4 365 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 AP4E1Q9UPM8 1137 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 SIT1Q9Y3P8 196 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 ASB3Q9Y575 518 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 GVINP1Q7Z2Y8 2422 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 AP1G2O75843 785 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 INHBAP08476 426 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 ATF6P18850 670 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 ATP5DP30049 168 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 GRIA1P42261 906 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 ERFP50548 548 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 TKTL1P51854 596 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 BMPR2Q13873 1038 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 TFDP2Q14188 446 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 DPYSL3Q14195 570 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 TXNDC8Q6A555 127 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 PPP1R2P3Q6NXS1 205 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 LCLAT1Q6UWP7 414 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 ARHGEF18Q6ZSZ5 1173 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 TBC1D1Q86TI0 1168 aaPredicted RBP8.89□□□□□ -0.99
VPS4B-201ENST00000238497 EIF1ADQ8N9N8 165 aaKnown RBP8.89□□□□□ -0.99
VPS4B-201ENST00000238497 TTC13Q8NBP0 860 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 CPT1BQ92523 772 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 ASB16Q96NS5 453 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 PITPNM3Q9BZ71 974 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 LHX5Q9H2C1 402 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 ETNK2Q9NVF9 386 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 NME7Q9Y5B8 376 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 MTCL1Q9Y4B5 1905 aaKnown RBP8.89□□□□□ -0.99
VPS4B-201ENST00000238497 C2CD4BA6NLJ0 364 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 FAM170BA6NMN3 283 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 SLC38A8A6NNN8 435 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 A6NNZ2 444 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 SCAMP3O14828 347 aaKnown RBP8.88□□□□□ -0.99
VPS4B-201ENST00000238497 TP73O15350 636 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 NEBLO76041 1014 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 TMEM63AO94886 807 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 PSMC3P17980 439 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 CDC25CP30307 473 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 MNAT1P51948 309 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 CAV1Q03135 178 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 OLIG2Q13516 323 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 TUBB8Q3ZCM7 444 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 HIBCHQ6NVY1 386 aaPredicted RBP8.88□□□□□ -0.99
VPS4B-201ENST00000238497 TP53INP2Q8IXH6 220 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 UBR7Q8N806 425 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 C12orf50Q8NA57 414 aaPredicted RBP8.88□□□□□ -0.99
VPS4B-201ENST00000238497 PGM2Q96G03 612 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 GDAP2Q9NXN4 497 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 SPTBN4Q9H254 2564 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 ANHXE9PGG2 379 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 CSH1P0DML2 217 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 CSH2P0DML3 217 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 ABCG1P45844 678 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 SMARCB1Q12824 385 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 MLF2Q15773 248 aaPredicted RBP8.88□□□□□ -0.99
VPS4B-201ENST00000238497 SYPL2Q5VXT5 272 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 SYDE1Q6ZW31 735 aaPredicted RBP8.88□□□□□ -0.99
VPS4B-201ENST00000238497 PID1Q7Z2X4 250 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 TADA2BQ86TJ2 420 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 PPIL6Q8IXY8 311 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 KIF2BQ8N4N8 673 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 B3GALNT2Q8NCR0 500 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 IRF7Q92985 503 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 RNF157Q96PX1 679 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 TXLNGYQ9BZA5 131 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 NSRP1Q9H0G5 558 aaKnown RBP8.88□□□□□ -0.99
VPS4B-201ENST00000238497 CDH9Q9ULB4 789 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 MAFFQ9ULX9 164 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 ATP8B3O60423 1300 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 MT-ND3P03897 115 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 KITP10721 976 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 PLA2G5P39877 138 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 PTPN5P54829 565 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 CORO7P57737 925 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 DEUP1Q05D60 604 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 TCEAL1Q15170 157 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 PRSS36Q5K4E3 855 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 HEATR6Q6AI08 1181 aaKnown RBP8.88□□□□□ -0.99
VPS4B-201ENST00000238497 BBS12Q6ZW61 710 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 ZCCHC9Q8N567 271 aaKnown RBP8.88□□□□□ -0.99
VPS4B-201ENST00000238497 PCDH19Q8TAB3 1148 aa8.88□□□□□ -0.99
VPS4B-201ENST00000238497 CELF6Q96J87 481 aaKnown RBP8.88□□□□□ -0.99
VPS4B-201ENST00000238497 TNIP3Q96KP6 325 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms