RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 IARS2Q9NSE4 1012 aaKnown RBP10.93□□□□□ -0.66
USP28-201ENST00000003302 APPL1Q9UKG1 709 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 A0A0G2JLL6 359 aaPredicted RBP10.92□□□□□ -0.66
USP28-201ENST00000003302 TMX2-CTNND1H3BSU7 103 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 FBXO21O94952 628 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 HNRNPLP14866 589 aaKnown RBP eCLIP10.92□□□□□ -0.66
USP28-201ENST00000003302 SMPD1P17405 629 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 BTKQ06187 659 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 ACAP1Q15027 740 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 PDCD2Q16342 344 aaPredicted RBP10.92□□□□□ -0.66
USP28-201ENST00000003302 LSM12Q3MHD2 195 aaKnown RBP10.92□□□□□ -0.66
USP28-201ENST00000003302 CWF19L1Q69YN2 538 aaKnown RBP10.92□□□□□ -0.66
USP28-201ENST00000003302 SLC26A9Q7LBE3 791 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 PRRT2Q7Z6L0 340 aaPredicted RBP10.92□□□□□ -0.66
USP28-201ENST00000003302 ZMIZ2Q8NF64 920 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 KCTD4Q8WVF5 259 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 FAM167AQ96KS9 214 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 KATNBL1Q9H079 304 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 DDX43Q9NXZ2 648 aaKnown RBP10.92□□□□□ -0.66
USP28-201ENST00000003302 SLC39A10Q9ULF5 831 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 PTGDR2Q9Y5Y4 395 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 SMIM28A0A1B0GU29 152 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 CPA3P15088 417 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 ATP6V1B1P15313 513 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 TPSB2P20231 275 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 NUDT2P50583 147 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 KLF10Q13118 480 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 TPSAB1Q15661 275 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 GRIK4Q16099 956 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 PLA2G4EQ3MJ16 856 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 ARL13AQ5H913 290 aaPredicted RBP10.92□□□□□ -0.66
USP28-201ENST00000003302 WSCD1Q658N2 575 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 RCN3Q96D15 328 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 CYP3A43Q9HB55 503 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 SPATS2LQ9NUQ6 558 aaKnown RBP10.92□□□□□ -0.66
USP28-201ENST00000003302 SSX2IPQ9Y2D8 614 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 MYBPHLA2RUH7 354 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 PPP6CO00743 305 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 CSPG5O95196 566 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 USP17L7P0C7H9 530 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 SMIM18P0DKX4 95 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 VCLP18206 1134 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 KCTD2Q14681 263 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 TRMT5Q32P41 509 aaKnown RBP10.92□□□□□ -0.66
USP28-201ENST00000003302 GRAMD1BQ3KR37 738 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 C6orf52Q5T4I8 152 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 CENPLQ8N0S6 344 aaPredicted RBP10.92□□□□□ -0.66
USP28-201ENST00000003302 GALNT15Q8N3T1 639 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 LRCH3Q96II8 777 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 SNX27Q96L92 541 aa10.92□□□□□ -0.66
USP28-201ENST00000003302 WDR6Q9NNW5 1121 aaKnown RBP10.92□□□□□ -0.66
USP28-201ENST00000003302 APOBEC2Q9Y235 224 aaKnown RBP10.92□□□□□ -0.66
USP28-201ENST00000003302 NFKB1P19838 968 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 TTLL12Q14166 644 aaPredicted RBP10.91□□□□□ -0.66
USP28-201ENST00000003302 ARHGAP17Q68EM7 881 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 OR9I1Q8NGQ6 314 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 HASPINQ8TF76 798 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 OPTNQ96CV9 577 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 CDCA5Q96FF9 252 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 FRMD8P1Q9BZ68 369 aaPredicted RBP10.91□□□□□ -0.66
USP28-201ENST00000003302 SEMA6AQ9H2E6 1030 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 ITGA11Q9UKX5 1188 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 GRID2O43424 1007 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 COX4I1P13073 169 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 ARNTP27540 789 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 GNL1P36915 607 aaPredicted RBP10.91□□□□□ -0.66
USP28-201ENST00000003302 LAMC2Q13753 1193 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 NOL9Q5SY16 702 aaKnown RBP10.91□□□□□ -0.66
USP28-201ENST00000003302 LRRC8BQ6P9F7 803 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 TMC7Q7Z402 723 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 GALNT4Q8N4A0 578 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 SLC7A14Q8TBB6 771 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 ADAMTS10Q9H324 1103 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 COPS7BQ9H9Q2 264 aaPredicted RBP10.91□□□□□ -0.66
USP28-201ENST00000003302 LIN28AQ9H9Z2 209 aaKnown RBP10.91□□□□□ -0.66
USP28-201ENST00000003302 WDFY3Q8IZQ1 3526 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 RALGDSQ12967 914 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 POU6F1Q14863 301 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 PPP1R2P3Q6NXS1 205 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 CLEC20AQ6ZU45 233 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 DNAAF3Q8N9W5 541 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 DNAJB3Q8WWF6 145 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 LPPQ93052 612 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 CDRT15Q96T59 188 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 OSBPL2Q9H1P3 480 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 MKS1Q9NXB0 559 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 TRIOO75962 3097 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 ATP6AP2A0A1C7CYW4 349 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 F8W8V4 182 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 DCLK1O15075 740 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 GPR32O75388 356 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 SPAG6O75602 509 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 ATP6AP2O75787 350 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 PGK1P00558 417 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 SERPINE1P05121 402 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 CMPK2Q5EBM0 449 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 IYDQ6PHW0 289 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 KBTBD6Q86V97 674 aa10.91□□□□□ -0.66
USP28-201ENST00000003302 APOBEC3FQ8IUX4 373 aaKnown RBP10.91□□□□□ -0.66
USP28-201ENST00000003302 SLC41A1Q8IVJ1 513 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms