RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 PRIM2P49643 509 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 ENPEPQ07075 957 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 RAB39AQ14964 217 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 DLG2Q15700 870 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 CHI3L2Q15782 390 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 DUSP7Q16829 419 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 IFIT1BQ5T764 474 aaKnown RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 PPP1R26Q5T8A7 1209 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 UNC5DQ6UXZ4 953 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 DSG4Q86SJ6 1040 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 IRF2BP1Q8IU81 584 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 ANKLE1Q8NAG6 615 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 NACC1Q96RE7 527 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 KCTD14Q9BQ13 255 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 DBNDD2Q9BQY9 259 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 PITHD1Q9GZP4 211 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 INTS2Q9H0H0 1204 aaKnown RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 OR51B5Q9H339 312 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 C17orf75Q9HAS0 396 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 CD274Q9NZQ7 290 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 RIMKLBQ9ULI2 386 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 CDY2AQ9Y6F7 541 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 RTL9Q8NET4 1388 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 KNDC1Q76NI1 1749 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 AGLP35573 1532 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 KCNH1O95259 989 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 ALBP02768 609 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 MYCLP12524 364 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 IL7P13232 177 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 RPL9P32969 192 aaKnown RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 STARP49675 285 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 NME5P56597 212 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 TFCP2Q12800 502 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 KCTD19Q17RG1 926 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 KNOP1Q1ED39 458 aaKnown RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 LRIT3Q3SXY7 679 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 GPATCH4Q5T3I0 446 aaKnown RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 TYW3Q6IPR3 259 aaKnown RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 DNAAF5Q86Y56 855 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 PROM2Q8N271 834 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 ABHD11Q8NFV4 315 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 RNASE11Q8TAA1 199 aaKnown RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 UBASH3BQ8TF42 649 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 GTF2H4Q92759 462 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 MYDGFQ969H8 173 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 SH3YL1Q96HL8 342 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 ZNF641Q96N77 438 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 TTYH2Q9BSA4 534 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 WDR70Q9NW82 654 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 BABAM1Q9NWV8 329 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 THG1LQ9NWX6 298 aaKnown RBP5.85□□□□□ -1.47
SCN1A-216ENST00000637968 GLTPQ9NZD2 209 aa5.85□□□□□ -1.47
SCN1A-216ENST00000637968 TRAV20A0A0B4J274 112 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 BET1O15155 118 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 TBX1O43435 398 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 TOB1P50616 345 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-216ENST00000637968 ERVK-21P61565 698 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 LLGL1Q15334 1064 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 ANGPT1Q15389 498 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 ZNF568Q3ZCX4 644 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 DGKKQ5KSL6 1271 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 MPP7Q5T2T1 576 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 C12orf60Q5U649 245 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 DENND5BQ6ZUT9 1274 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 SLC13A5Q86YT5 568 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-216ENST00000637968 MB21D2Q8IYB1 491 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-216ENST00000637968 OR8H2Q8N162 312 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 DHRSXQ8N5I4 330 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.84□□□□□ -1.47
SCN1A-216ENST00000637968 NXNL1Q96CM4 212 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 APOPT1Q96IL0 206 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 C12orf57Q99622 126 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 GTPBP2Q9BX10 602 aaKnown RBP5.84□□□□□ -1.47
SCN1A-216ENST00000637968 BRIP1Q9BX63 1249 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 MUC3BQ9H195 1237 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 ADGRE2Q9UHX3 823 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 LRRC7Q96NW7 1537 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 C2orf74A8MZ97 194 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 H3BMM5 538 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 TOR1AO14656 332 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 TOR1BO14657 336 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 CD48P09326 243 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 TMEM253P0C7T8 217 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 ALAS1P13196 640 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 TCN1P20061 433 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-216ENST00000637968 PGDP52209 483 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 HSD17B7P56937 341 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 ERVK-8P63133 956 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 RACK1P63244 317 aaKnown RBP5.84□□□□□ -1.47
SCN1A-216ENST00000637968 IFITM2Q01629 132 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 C1QBPQ07021 282 aaKnown RBP5.84□□□□□ -1.47
SCN1A-216ENST00000637968 TRAF3Q13114 568 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 TCIRG1Q13488 830 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 CCNIQ14094 377 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 UBAP2LQ14157 1087 aaKnown RBP5.84□□□□□ -1.47
SCN1A-216ENST00000637968 INPP5AQ14642 412 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 TAB1Q15750 504 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 SWI5Q1ZZU3 235 aa5.84□□□□□ -1.47
SCN1A-216ENST00000637968 BRDTQ58F21 947 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-216ENST00000637968 VARS2Q5ST30 1063 aaKnown RBP5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms