RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	SLC39A8	Q9C0K1	460 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	ZDHHC18	Q9NUE0	388 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	TDP1	Q9NUW8	608 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	PAK5	Q9P286	719 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	CFAP97	Q9P2B7	532 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	ZNF212	Q9UDV6	495 aa		12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	TPX2	Q9ULW0	747 aa	Known RBP	12.08	□□□□□ -0.48
CLN6-223	ENST00000637823	TMEM265	A0A087WTH1	108 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	ARHGAP42	A6NI28	874 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	SMAP	O00193	183 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	DFFA	O00273	331 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	DNALI1	O14645	258 aa	Predicted RBP	12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	TCF3	P15923	654 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	HOXB8	P17481	243 aa	Predicted RBP	12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	ECHS1	P30084	290 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	CHKA	P35790	457 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	PAPOLA	P51003	745 aa	Known RBP	12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	IRAK1	P51617	712 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	ITGA8	P53708	1063 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	PLTP	P55058	493 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	YBEY	P58557	167 aa	Predicted RBP	12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	ADAM15	Q13444	863 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	KCTD19	Q17RG1	926 aa	Predicted RBP	12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	BEND6	Q5SZJ8	279 aa	Predicted RBP	12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	RARS2	Q5T160	578 aa	Known RBP	12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	IZUMO3	Q5VZ72	239 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	ANKRD54	Q6NXT1	300 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	ZDHHC24	Q6UX98	284 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	CHST9	Q7L1S5	443 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	TFAP2D	Q7Z6R9	452 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	GPR149	Q86SP6	731 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	TP53INP2	Q8IXH6	220 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	CFAP52	Q8N1V2	620 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	CPXM2	Q8N436	756 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	NETO2	Q8NC67	525 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	SH3RF2	Q8TEC5	729 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	USP13	Q92995	863 aa	Predicted RBP	12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	CAVIN3	Q969G5	261 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	MYEOV	Q96EZ4	313 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	P2RY11	Q96G91	374 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	CELF6	Q96J87	481 aa	Known RBP	12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	FOXP3	Q9BZS1	431 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	TSPYL1	Q9H0U9	437 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	ADAM7	Q9H2U9	754 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	NOL6	Q9H6R4	1146 aa	Known RBP	12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	NDFIP2	Q9NV92	336 aa		12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	MTRF1L	Q9UGC7	380 aa	Known RBP	12.07	□□□□□ -0.48
CLN6-223	ENST00000637823	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	12.07	□□□□□ -0.48
CLN6-223	ENST00000637823		A0A0A0MRY4	1105 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	GFRA2	O00451	464 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	TSPAN3	O60637	253 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	OPHN1	O60890	802 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	GLP2R	O95838	553 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	VAV1	P15498	845 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	CEBPB	P17676	345 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	OR1E1	P30953	314 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	RPS24	P62847	133 aa	Known RBP	12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	ZNF177	Q13360	481 aa	Predicted RBP	12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	MORF4L2	Q15014	288 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	POLD3	Q15054	466 aa	Predicted RBP	12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	PARP15	Q460N3	678 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	ANKRD20A2	Q5SQ80	823 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	ANKRD20A1	Q5TYW2	823 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	ANKRD20A3	Q5VUR7	823 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	TIGD7	Q6NT04	549 aa	Predicted RBP	12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	HIBCH	Q6NVY1	386 aa	Predicted RBP	12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	RHBDF2	Q6PJF5	856 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	SETD3	Q86TU7	594 aa	Predicted RBP	12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	GSPT2	Q8IYD1	628 aa	Known RBP	12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	CCDC13	Q8IYE1	715 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	ATPAF2	Q8N5M1	289 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	KIAA1958	Q8N8K9	716 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	HJURP	Q8NCD3	748 aa	Predicted RBP	12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	ITFG1	Q8TB96	612 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	FBXO25	Q8TCJ0	367 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	LRRN4	Q8WUT4	740 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	FATE1	Q969F0	183 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	TMA16	Q96EY4	203 aa	Known RBP	12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	SPATA13	Q96N96	652 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	FMO2	Q99518	471 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	VAT1	Q99536	393 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	MAGEH1	Q9H213	219 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	NEUROG2	Q9H2A3	272 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	TRHDE	Q9UKU6	1024 aa		12.06	□□□□□ -0.48
CLN6-223	ENST00000637823	PRRC2B	Q5JSZ5	2229 aa	Known RBP	12.06	□□□□□ -0.48
CLN6-223	ENST00000637823		A0A1B0GVM2	712 aa		12.05	□□□□□ -0.48
CLN6-223	ENST00000637823	TYW5	A2RUC4	315 aa	Known RBP	12.05	□□□□□ -0.48
CLN6-223	ENST00000637823	TCAF2	A6NFQ2	919 aa		12.05	□□□□□ -0.48
CLN6-223	ENST00000637823	RASA4B	C9J798	803 aa		12.05	□□□□□ -0.48
CLN6-223	ENST00000637823	RNF103	O00237	685 aa		12.05	□□□□□ -0.48
CLN6-223	ENST00000637823	TRDMT1	O14717	391 aa	Known RBP	12.05	□□□□□ -0.48
CLN6-223	ENST00000637823	MATN3	O15232	486 aa		12.05	□□□□□ -0.48
CLN6-223	ENST00000637823	TP73	O15350	636 aa		12.05	□□□□□ -0.48
CLN6-223	ENST00000637823	LINC01565	O15544	149 aa		12.05	□□□□□ -0.48
CLN6-223	ENST00000637823	RASA4	O43374	803 aa		12.05	□□□□□ -0.48
CLN6-223	ENST00000637823	MAFK	O60675	156 aa		12.05	□□□□□ -0.48
CLN6-223	ENST00000637823	RAMP2	O60895	175 aa		12.05	□□□□□ -0.48
CLN6-223	ENST00000637823	FAM153B	P0C7A2	387 aa		12.05	□□□□□ -0.48
CLN6-223	ENST00000637823	POU3F3	P20264	500 aa	Predicted RBP	12.05	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms