RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 MAGEE2Q8TD90 523 aaPredicted RBP11.26□□□□□ -0.61
CLN3-244ENST00000636147 LPAR1Q92633 364 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 CASP10Q92851 521 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 NCKIPSDQ9NZQ3 722 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 STAP1Q9ULZ2 295 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 EFR3BQ9Y2G0 817 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 ATP11BQ9Y2G3 1177 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 PDE4DIPQ5VU43 2346 aa11.26□□□□□ -0.61
CLN3-244ENST00000636147 TRPC5OSA6NMA1 111 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 TK2O00142 265 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 KLF11O14901 512 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 LYPLA2O95372 231 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 PPARGP37231 505 aaPredicted RBP11.25□□□□□ -0.61
CLN3-244ENST00000636147 STT3AP46977 705 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 INHBEP58166 350 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 NSUN2Q08J23 767 aaKnown RBP eCLIP11.25□□□□□ -0.61
CLN3-244ENST00000636147 TMEM62Q0P6H9 643 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 SFSWAPQ12872 951 aaKnown RBP11.25□□□□□ -0.61
CLN3-244ENST00000636147 PLCL1Q15111 1095 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 C4orf22Q6V702 233 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 NIPA1Q7RTP0 329 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 KCNMB4Q86W47 210 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 HERC6Q8IVU3 1022 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 UBR7Q8N806 425 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 RP9Q8TA86 221 aaKnown RBP11.25□□□□□ -0.61
CLN3-244ENST00000636147 SEPT1Q8WYJ6 367 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 NCLNQ969V3 563 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 CPB2Q96IY4 423 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 TEX13BQ9BXU2 312 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 PORCNQ9H237 461 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 RAB26Q9ULW5 256 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 PRPF19Q9UMS4 504 aaKnown RBP11.25□□□□□ -0.61
CLN3-244ENST00000636147 DCCP43146 1447 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 ECM29Q5VYK3 1845 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 TTC36A6NLP5 189 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 M0R3G1 203 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 ESRRBO95718 433 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 NFICP08651 508 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 GFAPP14136 432 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 GOT1P17174 413 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 TFEBP19484 476 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 ATXN1P54253 815 aaKnown RBP11.25□□□□□ -0.61
CLN3-244ENST00000636147 MRPS5P82675 430 aaKnown RBP11.25□□□□□ -0.61
CLN3-244ENST00000636147 ZNF252P-AS1Q0IIN9 211 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 GK3PQ14409 553 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 NR1D2Q14995 579 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 CA9Q16790 459 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 XKR5Q6UX68 686 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 OFCC1Q8IZS5 231 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 SLC7A14Q8TBB6 771 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 LPGAT1Q92604 370 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 DLG3Q92796 817 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 DGCR6LQ9BY27 220 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 C20orf27Q9GZN8 174 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 CLK4Q9HAZ1 481 aaKnown RBP11.25□□□□□ -0.61
CLN3-244ENST00000636147 ARHGAP28Q9P2N2 729 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 HEMK1Q9Y5R4 338 aaPredicted RBP11.25□□□□□ -0.61
CLN3-244ENST00000636147 PMM2O15305 246 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 DNAJA2O60884 412 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 STAG3L1P0CL83 205 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 STMN1P16949 149 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 LRPAP1P30533 357 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 PGGT1BP53609 377 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 TSPY1Q01534 308 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 LAMTOR4Q0VGL1 99 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 CAPSQ13938 189 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 MXD4Q14582 209 aaPredicted RBP11.25□□□□□ -0.61
CLN3-244ENST00000636147 SH3D19Q5HYK7 790 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 C6orf10Q5SRN2 563 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 GRTP1Q5TC63 336 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 IL23RQ5VWK5 629 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 EEF1DP3Q658K8 133 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 EFCAB12Q6NXP0 572 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 MPZL3Q6UWV2 235 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 CCDC81Q6ZN84 652 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 CATSPER4Q7RTX7 472 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 VSIG10LQ86VR7 867 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 CROCCP3Q8IVE0 287 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 ADGRF2Q8IZF7 708 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 ZC3H15Q8WU90 426 aaKnown RBP11.25□□□□□ -0.61
CLN3-244ENST00000636147 TUBGCP3Q96CW5 907 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 SPATA33Q96N06 139 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 PGLYRP2Q96PD5 576 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 SDCBP2Q9H190 292 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 EURLQ9NYK6 297 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 PHF24Q9UPV7 400 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 PSAT1Q9Y617 370 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 SRCAPQ6ZRS2 3230 aa11.25□□□□□ -0.61
CLN3-244ENST00000636147 A0A0J9YVX5 310 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 PTGES3LE9PB15 166 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 PSMD12O00232 456 aaPredicted RBP11.24□□□□□ -0.61
CLN3-244ENST00000636147 B4GALT5O43286 388 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 CCNT2O60583 730 aaKnown RBP11.24□□□□□ -0.61
CLN3-244ENST00000636147 PARNO95453 639 aaKnown RBP11.24□□□□□ -0.61
CLN3-244ENST00000636147 FASP25445 335 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 CCR10P46092 362 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 NOVP48745 357 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 SLC7A2P52569 658 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 PARP8Q8N3A8 854 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 PCDH19Q8TAB3 1148 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms