RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 MEF2AQ02078 507 aaPredicted RBP4.88□□□□□ -1.63
LINC00540-201ENST00000611481 PPARAQ07869 468 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 MAPRE1Q15691 268 aaKnown RBP4.88□□□□□ -1.63
LINC00540-201ENST00000611481 KRTAP21-3Q3LHN1 58 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 HSDL1Q3SXM5 330 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 INO80DQ53TQ3 878 aaPredicted RBP4.88□□□□□ -1.63
LINC00540-201ENST00000611481 AGAP9Q5VTM2 703 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 CNNM4Q6P4Q7 775 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 STRA8Q7Z7C7 330 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 RSPH3Q86UC2 560 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 ZBTB46Q86UZ6 589 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 FAM160B2Q86V87 743 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 WDR5BQ86VZ2 330 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 RPAP2Q8IXW5 612 aaPredicted RBP4.88□□□□□ -1.63
LINC00540-201ENST00000611481 SLC39A11Q8N1S5 342 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 PPM1KQ8N3J5 372 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 SPEM1Q8N4L4 309 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 PNPLA1Q8N8W4 532 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 GPATCH11Q8N954 259 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 CMASQ8NFW8 434 aaPredicted RBP4.88□□□□□ -1.63
LINC00540-201ENST00000611481 CHURC1Q8WUH1 139 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 LMBR1Q8WVP7 490 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 PHKBQ93100 1093 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 SPATA33Q96N06 139 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 NEU1Q99519 415 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 KXD1Q9BQD3 176 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 SLC29A3Q9BZD2 475 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 SEMA4CQ9C0C4 833 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 PUS7LQ9H0K6 701 aaKnown RBP4.88□□□□□ -1.63
LINC00540-201ENST00000611481 ZBP1Q9H171 429 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 MAN1C1Q9NR34 630 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 DKK4Q9UBT3 224 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 ZNF180Q9UJW8 692 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 INTUQ9ULD6 942 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 PADI3Q9ULW8 664 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 LAMA1P25391 3075 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 PRSS38A1L453 326 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 BRINP1O60477 761 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 RFPL2O75678 378 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 IFIT2P09913 472 aaKnown RBP4.87□□□□□ -1.63
LINC00540-201ENST00000611481 CTSAP10619 480 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 TRIM27P14373 513 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 PTMSP20962 102 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 PXNP49023 591 aaPredicted RBP4.87□□□□□ -1.63
LINC00540-201ENST00000611481 CHN2P52757 468 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 CACNA2D1P54289 1103 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 RPS6P62753 249 aaKnown RBP4.87□□□□□ -1.63
LINC00540-201ENST00000611481 GIT2Q14161 759 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 TMEM266Q2M3C6 531 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 GRAMD1BQ3KR37 738 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 GPR158Q5T848 1215 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 HIST2H2BCQ6DN03 193 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 Q6ZNX1 250 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 LRRC43Q8N309 656 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 OR56A1Q8NGH5 318 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 DNAJB3Q8WWF6 145 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 MTMR8Q96EF0 704 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.87□□□□□ -1.63
LINC00540-201ENST00000611481 ATP6V0A4Q9HBG4 840 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 C2orf42Q9NWW7 574 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 NOX1Q9Y5S8 564 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 LRRK2Q5S007 2527 aa4.87□□□□□ -1.63
LINC00540-201ENST00000611481 SETD2Q9BYW2 2564 aaPredicted RBP4.87□□□□□ -1.63
LINC00540-201ENST00000611481 TSC2P49815 1807 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 BCLAF3A2AJT9 711 aaKnown RBP4.86□□□□□ -1.63
LINC00540-201ENST00000611481 DENND3A2RUS2 1198 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 DRGXA6NNA5 263 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 GPR39O43194 453 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 MGEA5O60502 916 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 PROP1O75360 226 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 PAPSS2O95340 614 aaPredicted RBP4.86□□□□□ -1.63
LINC00540-201ENST00000611481 LGALS2P05162 132 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 ICAM1P05362 532 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 IRX4P78413 519 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 MRPS6P82932 125 aaKnown RBP4.86□□□□□ -1.63
LINC00540-201ENST00000611481 STRN3Q13033 797 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 DHCR24Q15392 516 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 PLK5Q496M5 336 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 CCDC158Q5M9N0 1113 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 C12orf60Q5U649 245 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 CXorf57Q6NSI4 855 aaKnown RBP4.86□□□□□ -1.63
LINC00540-201ENST00000611481 TAF2Q6P1X5 1199 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 Q6ZS52 159 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 MTSS1LQ765P7 747 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 PIP4P1Q86T03 277 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 MARCH9Q86YJ5 346 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 RHOT2Q8IXI1 618 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 TMEM132CQ8N3T6 1108 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 GMCL1P1Q8NEA9 526 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 SNX33Q8WV41 574 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 CHTF18Q8WVB6 975 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 LEO1Q8WVC0 666 aaPredicted RBP4.86□□□□□ -1.63
LINC00540-201ENST00000611481 ADAMTS14Q8WXS8 1223 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 FAM3CQ92520 227 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 FUBP1Q96AE4 644 aaKnown RBP4.86□□□□□ -1.63
LINC00540-201ENST00000611481 ZNF707Q96C28 371 aaPredicted RBP4.86□□□□□ -1.63
LINC00540-201ENST00000611481 CEP95Q96GE4 821 aa4.86□□□□□ -1.63
LINC00540-201ENST00000611481 ZC3H10Q96K80 434 aaKnown RBP4.86□□□□□ -1.63
LINC00540-201ENST00000611481 SMAD5Q99717 465 aaKnown RBP4.86□□□□□ -1.63
LINC00540-201ENST00000611481 ALOXE3Q9BYJ1 711 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms