RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 AMHR2Q16671 573 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 HSP90AA5PQ58FG0 334 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 SLC9A4Q6AI14 798 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 KLC3Q6P597 504 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 CHST13Q8NET6 341 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 CDH19Q9H159 772 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 LHX5Q9H2C1 402 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 NDUFA13Q9P0J0 144 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 DCDC2Q9UHG0 476 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 BOLA2-SMG1P6H3BVE0 249 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 MT-CO1P00395 513 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 ETFBP38117 255 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 DPP6P42658 865 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 IGBP1P78318 339 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 LSM12Q3MHD2 195 aaKnown RBP18.75■□□□□ 0.59
UPF1-210ENST00000600689 KCTD21Q4G0X4 260 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 GAB3Q8WWW8 586 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 ZNF669Q96BR6 464 aaPredicted RBP18.75■□□□□ 0.59
UPF1-210ENST00000600689 ERLEC1Q96DZ1 483 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 SGF29Q96ES7 293 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 SCYL1Q96KG9 808 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 TRPV6Q9H1D0 765 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 MOCS1Q9NZB8 636 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 CPSF3Q9UKF6 684 aaKnown RBP18.75■□□□□ 0.59
UPF1-210ENST00000600689 PTPRFP10586 1907 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 KCNK1O00180 336 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 RNASEH2AO75792 299 aaKnown RBP18.75■□□□□ 0.59
UPF1-210ENST00000600689 ICAM3P32942 547 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 SOX11P35716 441 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 PMF1Q6P1K2 205 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 STRA8Q7Z7C7 330 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 SPATC1LQ9H0A9 340 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 STK39Q9UEW8 545 aa18.75■□□□□ 0.59
UPF1-210ENST00000600689 TMEM233B4DJY2 109 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 TK2O00142 265 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 CASQ2O14958 399 aaPredicted RBP18.74■□□□□ 0.59
UPF1-210ENST00000600689 HCRTO43612 131 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 FAM189A1O60320 539 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 ARIH2O95376 493 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 HDCP19113 662 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 PSMB4P28070 264 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 LAMTOR4Q0VGL1 99 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 RALGDSQ12967 914 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 GOLGA7BQ2TAP0 167 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 IL23RQ5VWK5 629 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 ITPRIPL1Q6GPH6 555 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 CDKL3Q8IVW4 592 aaPredicted RBP18.74■□□□□ 0.59
UPF1-210ENST00000600689 CCNYL1Q8N7R7 359 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 RIN3Q8TB24 985 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 NLRP7Q8WX94 980 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 MRPS26Q9BYN8 205 aaKnown RBP18.74■□□□□ 0.59
UPF1-210ENST00000600689 RPF1Q9H9Y2 349 aaKnown RBP18.74■□□□□ 0.59
UPF1-210ENST00000600689 DMTF1Q9Y222 760 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 GRK2P25098 689 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 MAGEA10P43363 369 aaPredicted RBP18.74■□□□□ 0.59
UPF1-210ENST00000600689 XIAPP98170 497 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 DCTN2Q13561 401 aaKnown RBP18.74■□□□□ 0.59
UPF1-210ENST00000600689 JADE1Q6IE81 842 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 ACOT1Q86TX2 421 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 NDRG1Q92597 394 aaKnown RBP18.74■□□□□ 0.59
UPF1-210ENST00000600689 SERPINI1Q99574 410 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 RTKNQ9BST9 563 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 GATA5Q9BWX5 397 aaPredicted RBP18.74■□□□□ 0.59
UPF1-210ENST00000600689 WDR41Q9HAD4 459 aa18.74■□□□□ 0.59
UPF1-210ENST00000600689 C6orf203Q9P0P8 240 aaPredicted RBP18.74■□□□□ 0.59
UPF1-210ENST00000600689 A0A096LPK6 155 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 TMX2-CTNND1H3BSU7 103 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 PHGDHO43175 533 aaKnown RBP18.73■□□□□ 0.59
UPF1-210ENST00000600689 STAMBPO95630 424 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 PIGRP01833 764 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 GOT1P17174 413 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 PSMC3P17980 439 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 STAT5BP51692 787 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 MAPK10P53779 464 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 HSDL1Q3SXM5 330 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 LPCAT2Q7L5N7 544 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 FAM131BQ86XD5 332 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 DIS3LQ8TF46 1054 aaKnown RBP18.73■□□□□ 0.59
UPF1-210ENST00000600689 PPWD1Q96BP3 646 aaKnown RBP18.73■□□□□ 0.59
UPF1-210ENST00000600689 TXNRD2Q9NNW7 524 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 MKS1Q9NXB0 559 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 SNX13Q9Y5W8 968 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 MRPL42Q9Y6G3 142 aaKnown RBP18.73■□□□□ 0.59
UPF1-210ENST00000600689 ARHGAP10A1A4S6 786 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 BCLAF3A2AJT9 711 aaKnown RBP18.73■□□□□ 0.59
UPF1-210ENST00000600689 STRNO43815 780 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 TPH1P17752 444 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 SERPINB8P50452 374 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 PSMD7P51665 324 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 C16orf72Q14CZ0 275 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 ATF7IP2Q5U623 682 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 KRT80Q6KB66 452 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 KLHL35Q6PF15 583 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 ZNF410Q86VK4 478 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 DNAAF3Q8N9W5 541 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 OR52K1Q8NGK4 314 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 DOLKQ9UPQ8 538 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 PPP2R3BQ9Y5P8 575 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 CSADQ9Y600 493 aa18.73■□□□□ 0.59
UPF1-210ENST00000600689 CDY2AQ9Y6F7 541 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms