RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 TLR5O60602 858 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 LTFP02788 710 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 C1QTNF9P0C862 333 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 IRF1P10914 325 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 HOXB2P14652 356 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 TCF4P15884 667 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 PDGFRAP16234 1089 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 ENGP17813 658 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 TFE3P19532 575 aaPredicted RBP13.11□□□□□ -0.31
UPF1-208ENST00000600012 CTNNA2P26232 953 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 SDC4P31431 198 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 SLC1A1P43005 524 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 ZNF143P52747 638 aaPredicted RBP13.11□□□□□ -0.31
UPF1-208ENST00000600012 PIGHQ14442 188 aaPredicted RBP13.11□□□□□ -0.31
UPF1-208ENST00000600012 CDO1Q16878 200 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 CCDC14Q49A88 953 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 RAB6CQ53S08 254 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 SLC36A4Q6YBV0 504 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 TMEM25Q86YD3 366 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 DEFB106AQ8N104 65 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 NIPA2Q8N8Q9 360 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 DEFB124Q8NES8 71 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 FNIP1Q8TF40 1166 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 HES6Q96HZ4 224 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 OSBPL9Q96SU4 736 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 CNPY3Q9BT09 278 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 ADAM33Q9BZ11 813 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 RAB6CQ9H0N0 254 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 SLC32A1Q9H598 525 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 TLR8Q9NR97 1041 aaKnown RBP13.11□□□□□ -0.31
UPF1-208ENST00000600012 TMEM74BQ9NUR3 256 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 ASNSD1Q9NWL6 643 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.11□□□□□ -0.31
UPF1-208ENST00000600012 LCMT1Q9UIC8 334 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 PILRBQ9UKJ0 227 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 STARD13Q9Y3M8 1113 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 SAR1BQ9Y6B6 198 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 USP3Q9Y6I4 520 aa13.11□□□□□ -0.31
UPF1-208ENST00000600012 TMEM8BA6NDV4 472 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 MIF4GDA9UHW6 222 aaKnown RBP13.1□□□□□ -0.31
UPF1-208ENST00000600012 KCNK3O14649 394 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 ZNF185O15231 689 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 ZBTB24O43167 697 aaPredicted RBP13.1□□□□□ -0.31
UPF1-208ENST00000600012 SART1O43290 800 aaKnown RBP13.1□□□□□ -0.31
UPF1-208ENST00000600012 LRCH4O75427 683 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 CFIP05156 583 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 FYNP06241 537 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 GLI1P08151 1106 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 GABRG2P18507 467 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 ITPKAP23677 461 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 NTSR1P30989 418 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 CTNNA1P35221 906 aaKnown RBP13.1□□□□□ -0.31
UPF1-208ENST00000600012 MAPK8P45983 427 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 SULT1E1P49888 294 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 YWHAZP63104 245 aaKnown RBP13.1□□□□□ -0.31
UPF1-208ENST00000600012 PITX1P78337 314 aaPredicted RBP13.1□□□□□ -0.31
UPF1-208ENST00000600012 ATP11AP98196 1134 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 RPL6Q02878 288 aaKnown RBP13.1□□□□□ -0.31
UPF1-208ENST00000600012 DUOXA1Q1HG43 343 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 PM20D1Q6GTS8 502 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 GRAMD4Q6IC98 578 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 HTR3DQ70Z44 454 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 RABEPKQ7Z6M1 372 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 SCML4Q8N228 414 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 ARFGAP1Q8N6T3 406 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 KDF1Q8NAX2 398 aaPredicted RBP13.1□□□□□ -0.31
UPF1-208ENST00000600012 CEP76Q8TAP6 659 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 IRGQQ8WZA9 623 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 EDEM1Q92611 657 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 ALG3Q92685 438 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 CAPZA3Q96KX2 299 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 SLC2A13Q96QE2 648 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 XPO6Q96QU8 1125 aaKnown RBP13.1□□□□□ -0.31
UPF1-208ENST00000600012 POPDC2Q9HBU9 364 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 CALCOCO1Q9P1Z2 691 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 LSM7Q9UK45 103 aaKnown RBP13.1□□□□□ -0.31
UPF1-208ENST00000600012 SLC6A14Q9UN76 642 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 NAALADL1Q9UQQ1 740 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 MRFAP1Q9Y605 127 aa13.1□□□□□ -0.31
UPF1-208ENST00000600012 ATXN2Q99700 1313 aaKnown RBP13.1□□□□□ -0.31
UPF1-208ENST00000600012 CACNA1GO43497 2377 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 PCDH15Q96QU1 1955 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 FRYQ5TBA9 3013 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 CAPN9O14815 690 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 CACNG3O60359 315 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 ZNF217O75362 1048 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 TCP1P17987 556 aaKnown RBP13.09□□□□□ -0.31
UPF1-208ENST00000600012 SPINK2P20155 84 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 MATKP42679 507 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 PTPN9P43378 593 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 PGFP49763 221 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 ATXN3P54252 364 aaPredicted RBP13.09□□□□□ -0.31
UPF1-208ENST00000600012 YWHAGP61981 247 aaKnown RBP eCLIP13.09□□□□□ -0.31
UPF1-208ENST00000600012 ZNF211Q13398 564 aaPredicted RBP13.09□□□□□ -0.31
UPF1-208ENST00000600012 DCAF6Q58WW2 860 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 DCAF12L1Q5VU92 463 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 OTUD1Q5VV17 481 aaPredicted RBP13.09□□□□□ -0.31
UPF1-208ENST00000600012 SYPL2Q5VXT5 272 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 BSPRYQ5W0U4 402 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 SDE2Q6IQ49 451 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms