RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 CD38P28907 300 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 GGCXP38435 758 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 SLC11A2P49281 568 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 ACADVLP49748 655 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 ST8SIA6P61647 398 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 RACK1P63244 317 aaKnown RBP8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 ZBTB16Q05516 673 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 CDH18Q13634 790 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 HNRNPA1L2Q32P51 320 aaKnown RBP8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 TAF1BQ53T94 588 aaPredicted RBP8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 SYPL2Q5VXT5 272 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 RAP1GAP2Q684P5 730 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 ANKRD40Q6AI12 368 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 MSANTD2Q6P1R3 559 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 RRAGAQ7L523 313 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 TAC4Q86UU9 113 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 SPATS2Q86XZ4 545 aaKnown RBP8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 ARHGEF19Q8IW93 802 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 LGI2Q8N0V4 545 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 FIBINQ8TAL6 211 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 DQX1Q8TE96 717 aaKnown RBP8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 SAP25Q8TEE9 199 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 SLC35F5Q8WV83 523 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 KCTD13Q8WZ19 329 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 KLK6Q92876 244 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 SNX21Q969T3 373 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 CCDC47Q96A33 483 aaKnown RBP8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 TTC17Q96AE7 1141 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 NAF1Q96HR8 494 aaKnown RBP8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 SERAC1Q96JX3 654 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 OMDQ99983 421 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 OSGEPQ9NPF4 335 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 CNGB3Q9NQW8 809 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 ANKMY1Q9P2S6 941 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 TJP2Q9UDY2 1190 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 SUN2Q9UH99 717 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 USP25Q9UHP3 1055 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 COL5A1P20908 1838 aaPredicted RBP8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 SYNJ2BP-COX16A0A087WUM0 186 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 FAM237AA0A1B0GTK4 181 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 RFPL3O75679 317 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 ZNF202O95125 648 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 SETSIPP0DME0 302 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 PDGFRAP16234 1089 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 MZF1P28698 734 aaPredicted RBP8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 EPHA8P29322 1005 aaPredicted RBP8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 DRD3P35462 400 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 IRAK1P51617 712 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 ADPRHP54922 357 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 CCDC173Q0VFZ6 552 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 TAF5Q15542 800 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 EDRF1Q3B7T1 1238 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 ZC3H12AQ5D1E8 599 aaKnown RBP8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 MS4A13Q5J8X5 152 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 ATL3Q6DD88 541 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 LCLAT1Q6UWP7 414 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 CHSY1Q86X52 802 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 PPM1KQ8N3J5 372 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 HJURPQ8NCD3 748 aaPredicted RBP8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 OR52K2Q8NGK3 314 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 OR2T34Q8NGX1 318 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 PTPRN2Q92932 1015 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 SLC35C1Q96A29 364 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 FAM149B1Q96BN6 582 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 DNAI2Q9GZS0 605 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 ACP6Q9NPH0 428 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 ST7Q9NRC1 585 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 COX16Q9P0S2 106 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 IL17BQ9UHF5 180 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 SARDHQ9UL12 918 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 COQ4Q9Y3A0 265 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 BSNQ9UPA5 3926 aa8.94□□□□□ -0.98
SHKBP1-220ENST00000599716 NAV3Q8IVL0 2385 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 TBC1D3DA0A087WVF3 549 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 TBC1D3IA0A087WXS9 549 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 TBC1D3EA0A087X179 549 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 TBC1D3KA0A087X1G2 549 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 TBC1D3FA6NER0 549 aaPredicted RBP8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 LRRC72A6NJI9 287 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 TBC1D3LB9A6J9 549 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 TLR4O00206 839 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 RNF103O00237 685 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 TRIM38O00635 465 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 PAPSS1O43252 624 aaPredicted RBP8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 BNIP3LO60238 219 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 BRINP1O60477 761 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 RNASEH1O60930 286 aaKnown RBP8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 LUC7L3O95232 432 aaKnown RBP8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 LATS1O95835 1130 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 MYL1P05976 194 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 TBC1D3HP0C7X1 549 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 C7P10643 843 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 PRLRP16471 622 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 NXPH1P58417 271 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 MCCD1P59942 119 aaPredicted RBP8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 KRT85P78386 507 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 CENPCQ03188 943 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 SERINC3Q13530 473 aa8.93□□□□□ -0.98
SHKBP1-220ENST00000599716 C6orf118Q5T5N4 469 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms