RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 SRPK1Q96SB4 655 aaKnown RBP14.81□□□□□ -0.04
VRK3-217ENST00000599538 SLC13A1Q9BZW2 595 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 SLC39A8Q9C0K1 460 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 SCML2Q9UQR0 700 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 ARL2BPQ9Y2Y0 163 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 TRIM17Q9Y577 477 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 PCDHB5Q9Y5E4 795 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 ARHGAP42A6NI28 874 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 SYN3O14994 580 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 UBOX5O94941 541 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 ERVK-10P10266 1014 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 TPH1P17752 444 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 PGAM1P18669 254 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 APLP1P51693 650 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 CCL23P55773 120 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 SEPT7Q16181 437 aaKnown RBP14.81□□□□□ -0.04
VRK3-217ENST00000599538 NFE2Q16621 373 aaPredicted RBP14.81□□□□□ -0.04
VRK3-217ENST00000599538 CERCAMQ5T4B2 595 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 PIK3R6Q5UE93 754 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 FBXW10Q5XX13 1052 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 FITM2Q8N6M3 262 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 SPATA22Q8NHS9 363 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 PPM1EQ8WY54 764 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 TTC17Q96AE7 1141 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 C8orf48Q96LL4 319 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 TRIM62Q9BVG3 475 aa14.81□□□□□ -0.04
VRK3-217ENST00000599538 NYNRINQ9P2P1 1898 aaKnown RBP14.81□□□□□ -0.04
VRK3-217ENST00000599538 BPTFQ12830 3046 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 ALDH2P05091 517 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 HOXC13P31276 330 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 TUBP50607 506 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 ZNF135P52742 658 aaPredicted RBP14.8□□□□□ -0.04
VRK3-217ENST00000599538 ATN1P54259 1190 aaPredicted RBP14.8□□□□□ -0.04
VRK3-217ENST00000599538 RNF19BQ6ZMZ0 732 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 MON1AQ86VX9 555 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 MECRQ9BV79 373 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 ELAC1Q9H777 363 aaKnown RBP14.8□□□□□ -0.04
VRK3-217ENST00000599538 STARD13Q9Y3M8 1113 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 RPS6KL1Q9Y6S9 549 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 PLXNA3P51805 1871 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 E9PAM4 449 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 COPEO14579 308 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 MAFKO60675 156 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 MT-CYBP00156 380 aaPredicted RBP14.8□□□□□ -0.04
VRK3-217ENST00000599538 FGFR3P22607 806 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 CYP2C18P33260 490 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 MAP2K2P36507 400 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 GMPRP36959 345 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 OVGP1Q12889 678 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 BFSP2Q13515 415 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 PPP2R5DQ14738 602 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 FUT10Q6P4F1 479 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 CYS1Q717R9 158 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 PACS2Q86VP3 889 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 DNAAF3Q8N9W5 541 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 TBC1D31Q96DN5 1066 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 SLC39A13Q96H72 371 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 DEFB118Q96PH6 123 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 BRD8Q9H0E9 1235 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 CASS4Q9NQ75 786 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 PCMTD2Q9NV79 361 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 PCDH10Q9P2E7 1040 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 VANGL2Q9ULK5 521 aa14.8□□□□□ -0.04
VRK3-217ENST00000599538 MTMR11A4FU01 709 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 ATP9BO43861 1147 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 KRT38O76015 456 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 GALTP07902 379 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 COL6A1P12109 1028 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 ALADP13716 330 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 CPB1P15086 417 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 CCNFP41002 786 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 MLLT6P55198 1093 aaPredicted RBP14.79□□□□□ -0.04
VRK3-217ENST00000599538 EFEMP1Q12805 493 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 RASIP1Q5U651 963 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 CES4AQ5XG92 561 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 ZNF280DQ6N043 979 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 PRSS55Q6UWB4 352 aaPredicted RBP14.79□□□□□ -0.04
VRK3-217ENST00000599538 PACS1Q6VY07 963 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 MARK2Q7KZI7 788 aaKnown RBP14.79□□□□□ -0.04
VRK3-217ENST00000599538 MFSD3Q96ES6 412 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 VPS11Q9H270 941 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 MANSC1Q9H8J5 431 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 TRHDEQ9UKU6 1024 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 LRFN2Q9ULH4 789 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 SLC12A4Q9UP95 1085 aa14.79□□□□□ -0.04
VRK3-217ENST00000599538 CCDC78A2IDD5 438 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 TBKBP1A7MCY6 615 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 ADAM12O43184 909 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 MTSS1O43312 755 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 ALDOAP04075 364 aaKnown RBP14.78□□□□□ -0.04
VRK3-217ENST00000599538 CCNB1P14635 433 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 BGNP21810 368 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 PSMD5Q16401 504 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 MGAT5BQ3V5L5 792 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 MIB1Q86YT6 1006 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 NDUFAF2Q8N183 169 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 SEPT8Q92599 483 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 ZNF669Q96BR6 464 aaPredicted RBP14.78□□□□□ -0.04
VRK3-217ENST00000599538 GRAMD1AQ96CP6 724 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 ZNF778Q96MU6 729 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms