RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 FNIP1Q8TF40 1166 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 RLN3Q8WXF3 142 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 CNPY3Q9BT09 278 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 OSBPL2Q9H1P3 480 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 SLC6A17Q9H1V8 727 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 PPARGC1AQ9UBK2 798 aaKnown RBP16.61■□□□□ 0.25
TRIM28-213ENST00000598355 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.61■□□□□ 0.25
TRIM28-213ENST00000598355 ATMINO43313 823 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-213ENST00000598355 MOCS3O95396 460 aa16.6■□□□□ 0.25
TRIM28-213ENST00000598355 FTLP02792 175 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-213ENST00000598355 PLEKP08567 350 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-213ENST00000598355 CASP14P31944 242 aa16.6■□□□□ 0.25
TRIM28-213ENST00000598355 CTSOP43234 321 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-213ENST00000598355 ECT2LQ008S8 904 aa16.6■□□□□ 0.25
TRIM28-213ENST00000598355 SULT2A1Q06520 285 aa16.6■□□□□ 0.25
TRIM28-213ENST00000598355 HNRNPA1L2Q32P51 320 aaKnown RBP16.6■□□□□ 0.25
TRIM28-213ENST00000598355 TDRD12Q587J7 1177 aaKnown RBP16.6■□□□□ 0.25
TRIM28-213ENST00000598355 SETD3Q86TU7 594 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-213ENST00000598355 DNAAF5Q86Y56 855 aa16.6■□□□□ 0.25
TRIM28-213ENST00000598355 VSTM4Q8IW00 320 aa16.6■□□□□ 0.25
TRIM28-213ENST00000598355 CCDC185Q8N715 623 aa16.6■□□□□ 0.25
TRIM28-213ENST00000598355 FRMD1Q8N878 549 aa16.6■□□□□ 0.25
TRIM28-213ENST00000598355 OR2T3Q8NH03 318 aa16.6■□□□□ 0.25
TRIM28-213ENST00000598355 DNAJC7Q99615 494 aa16.6■□□□□ 0.25
TRIM28-213ENST00000598355 FEM1AQ9BSK4 669 aa16.6■□□□□ 0.25
TRIM28-213ENST00000598355 RETREG1Q9H6L5 497 aa16.6■□□□□ 0.25
TRIM28-213ENST00000598355 PRDM16Q9HAZ2 1276 aa16.6■□□□□ 0.25
TRIM28-213ENST00000598355 CD93Q9NPY3 652 aa16.6■□□□□ 0.25
TRIM28-213ENST00000598355 PRSS16Q9NQE7 514 aa16.6■□□□□ 0.25
TRIM28-213ENST00000598355 PARVAQ9NVD7 372 aa16.6■□□□□ 0.25
TRIM28-213ENST00000598355 ARHGAP20Q9P2F6 1191 aa16.6■□□□□ 0.25
TRIM28-213ENST00000598355 ERVW-1Q9UQF0 538 aa16.6■□□□□ 0.25
TRIM28-213ENST00000598355 PCDH15Q96QU1 1955 aa16.59■□□□□ 0.25
TRIM28-213ENST00000598355 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-213ENST00000598355 TMCO5BA8MYB1 307 aa16.59■□□□□ 0.25
TRIM28-213ENST00000598355 SYNCRIPO60506 623 aaKnown RBP16.59■□□□□ 0.25
TRIM28-213ENST00000598355 RHOBTB1O94844 696 aa16.59■□□□□ 0.25
TRIM28-213ENST00000598355 MYBL1P10243 752 aa16.59■□□□□ 0.25
TRIM28-213ENST00000598355 AIF1P55008 147 aa16.59■□□□□ 0.25
TRIM28-213ENST00000598355 SEMA3BQ13214 749 aa16.59■□□□□ 0.25
TRIM28-213ENST00000598355 ZNF177Q13360 481 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-213ENST00000598355 ARL13BQ3SXY8 428 aa16.59■□□□□ 0.25
TRIM28-213ENST00000598355 PEAR1Q5VY43 1037 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-213ENST00000598355 LRRC31Q6UY01 552 aa16.59■□□□□ 0.25
TRIM28-213ENST00000598355 TMPRSS6Q8IU80 811 aa16.59■□□□□ 0.25
TRIM28-213ENST00000598355 DRC7Q8IY82 874 aa16.59■□□□□ 0.25
TRIM28-213ENST00000598355 ZNF366Q8N895 744 aa16.59■□□□□ 0.25
TRIM28-213ENST00000598355 TRIM11Q96F44 468 aa16.59■□□□□ 0.25
TRIM28-213ENST00000598355 PPP1R9BQ96SB3 815 aa16.59■□□□□ 0.25
TRIM28-213ENST00000598355 PSMB7Q99436 277 aa16.59■□□□□ 0.25
TRIM28-213ENST00000598355 ADAMTS1Q9UHI8 967 aa16.59■□□□□ 0.25
TRIM28-213ENST00000598355 INVSQ9Y283 1065 aa16.59■□□□□ 0.25
TRIM28-213ENST00000598355 A0A087X0T9 212 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 BCLAF3A2AJT9 711 aaKnown RBP16.58■□□□□ 0.24
TRIM28-213ENST00000598355 ANKRD62A6NC57 917 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 TMEM191CA6NGB0 347 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 FAM228BP0C875 321 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 CSRP2Q16527 193 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 DCUN1D2Q6PH85 259 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 SLC36A4Q6YBV0 504 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 ZNF783Q6ZMS7 281 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 TMC6Q7Z403 805 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 NLRP14Q86W24 1093 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 PGBD3Q8N328 593 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 DCAF4L2Q8NA75 395 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 FRS2Q8WU20 508 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 CPLX3Q8WVH0 158 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 ZNF653Q96CK0 615 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 HINFPQ9BQA5 517 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 ZYG11BQ9C0D3 744 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 RSPH9Q9H1X1 276 aaPredicted RBP16.58■□□□□ 0.24
TRIM28-213ENST00000598355 ITM2CQ9NQX7 267 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 SEMA4GQ9NTN9 838 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 MPP6Q9NZW5 540 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 CNOT8Q9UFF9 292 aaKnown RBP16.58■□□□□ 0.24
TRIM28-213ENST00000598355 OR12D3Q9UGF7 316 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 SUN2Q9UH99 717 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 HS3ST2Q9Y278 367 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 SCINQ9Y6U3 715 aa16.58■□□□□ 0.24
TRIM28-213ENST00000598355 TARSL2A2RTX5 802 aaKnown RBP16.57■□□□□ 0.24
TRIM28-213ENST00000598355 FAM72CH0Y354 149 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 ZBTB24O43167 697 aaPredicted RBP16.57■□□□□ 0.24
TRIM28-213ENST00000598355 AP5Z1O43299 807 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 ATP9BO43861 1147 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 LRIG2O94898 1065 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 MPLP40238 635 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 STK19P49842 368 aaPredicted RBP16.57■□□□□ 0.24
TRIM28-213ENST00000598355 ST8SIA6P61647 398 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 ZBTB16Q05516 673 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 SPEM2Q0P670 501 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 C9orf64Q5T6V5 341 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 FAM72AQ5TYM5 149 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 FAM72DQ6L9T8 149 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 KIAA1324Q6UXG2 1013 aaKnown RBP16.57■□□□□ 0.24
TRIM28-213ENST00000598355 CYP4V2Q6ZWL3 525 aaPredicted RBP16.57■□□□□ 0.24
TRIM28-213ENST00000598355 LPCAT2Q7L5N7 544 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 VPS36Q86VN1 386 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 FAM72BQ86X60 149 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 ARFGAP1Q8N6T3 406 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 PRCCQ92733 491 aaPredicted RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms