RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 C1SP09871 688 aa14.04□□□□□ -0.16
TRIM28-211ENST00000597968 CD38P28907 300 aa14.04□□□□□ -0.16
TRIM28-211ENST00000597968 BPIFB4P59827 614 aa14.04□□□□□ -0.16
TRIM28-211ENST00000597968 CCDC15Q0P6D6 951 aa14.04□□□□□ -0.16
TRIM28-211ENST00000597968 SCAPQ12770 1279 aa14.04□□□□□ -0.16
TRIM28-211ENST00000597968 C5orf22Q49AR2 442 aa14.04□□□□□ -0.16
TRIM28-211ENST00000597968 NCEH1Q6PIU2 408 aa14.04□□□□□ -0.16
TRIM28-211ENST00000597968 C11orf57Q6ZUT1 292 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-211ENST00000597968 SLC26A9Q7LBE3 791 aa14.04□□□□□ -0.16
TRIM28-211ENST00000597968 IQCHQ86VS3 1027 aa14.04□□□□□ -0.16
TRIM28-211ENST00000597968 MMAAQ8IVH4 418 aaKnown RBP14.04□□□□□ -0.16
TRIM28-211ENST00000597968 DHX40Q8IX18 779 aaKnown RBP14.04□□□□□ -0.16
TRIM28-211ENST00000597968 CCAR2Q8N163 923 aaKnown RBP14.04□□□□□ -0.16
TRIM28-211ENST00000597968 CFAP52Q8N1V2 620 aa14.04□□□□□ -0.16
TRIM28-211ENST00000597968 MLKLQ8NB16 471 aa14.04□□□□□ -0.16
TRIM28-211ENST00000597968 ZNF397Q8NF99 534 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-211ENST00000597968 ADAM32Q8TC27 787 aa14.04□□□□□ -0.16
TRIM28-211ENST00000597968 PTPRN2Q92932 1015 aa14.04□□□□□ -0.16
TRIM28-211ENST00000597968 FAM129BQ96TA1 746 aa14.04□□□□□ -0.16
TRIM28-211ENST00000597968 ELF4Q99607 663 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-211ENST00000597968 NEUROG2Q9H2A3 272 aa14.04□□□□□ -0.16
TRIM28-211ENST00000597968 CYTH4Q9UIA0 394 aa14.04□□□□□ -0.16
TRIM28-211ENST00000597968 DMTF1Q9Y222 760 aa14.04□□□□□ -0.16
TRIM28-211ENST00000597968 A0A1W2PP55 124 aa14.03□□□□□ -0.16
TRIM28-211ENST00000597968 TTC34A8MYJ7 566 aa14.03□□□□□ -0.16
TRIM28-211ENST00000597968 LATO43561 262 aa14.03□□□□□ -0.16
TRIM28-211ENST00000597968 ATP9BO43861 1147 aa14.03□□□□□ -0.16
TRIM28-211ENST00000597968 CLDN11O75508 207 aa14.03□□□□□ -0.16
TRIM28-211ENST00000597968 CALCAP01258 141 aa14.03□□□□□ -0.16
TRIM28-211ENST00000597968 MZF1P28698 734 aaPredicted RBP14.03□□□□□ -0.16
TRIM28-211ENST00000597968 NOS2P35228 1153 aa14.03□□□□□ -0.16
TRIM28-211ENST00000597968 SCNN1AP37088 669 aa14.03□□□□□ -0.16
TRIM28-211ENST00000597968 ARRB1P49407 418 aaPredicted RBP14.03□□□□□ -0.16
TRIM28-211ENST00000597968 ADPRHP54922 357 aa14.03□□□□□ -0.16
TRIM28-211ENST00000597968 UBE2HP62256 183 aa14.03□□□□□ -0.16
TRIM28-211ENST00000597968 SMAD1Q15797 465 aaKnown RBP14.03□□□□□ -0.16
TRIM28-211ENST00000597968 FAM114A1Q8IWE2 563 aa14.03□□□□□ -0.16
TRIM28-211ENST00000597968 MYEOVQ96EZ4 313 aa14.03□□□□□ -0.16
TRIM28-211ENST00000597968 PGAP3Q96FM1 320 aaPredicted RBP14.03□□□□□ -0.16
TRIM28-211ENST00000597968 FAM204AQ9H8W3 233 aa14.03□□□□□ -0.16
TRIM28-211ENST00000597968 GDF3Q9NR23 364 aa14.03□□□□□ -0.16
TRIM28-211ENST00000597968 DDIT4Q9NX09 232 aa14.03□□□□□ -0.16
TRIM28-211ENST00000597968 XPO7Q9UIA9 1087 aaKnown RBP14.03□□□□□ -0.16
TRIM28-211ENST00000597968 SLC25A13Q9UJS0 675 aa14.03□□□□□ -0.16
TRIM28-211ENST00000597968 FAM208BQ5VWN6 2430 aa14.02□□□□□ -0.16
TRIM28-211ENST00000597968 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.02□□□□□ -0.17
TRIM28-211ENST00000597968 BECN2A8MW95 431 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 C1QTNF3-AMACRE9PGA6 284 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 H0Y8X5 98 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 RNGTTO60942 597 aaKnown RBP14.02□□□□□ -0.17
TRIM28-211ENST00000597968 SLC9A1P19634 815 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 PON1P27169 355 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 KRT9P35527 623 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 RXRGP48443 463 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 CDH4P55283 916 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 ZNF177Q13360 481 aaPredicted RBP14.02□□□□□ -0.17
TRIM28-211ENST00000597968 CAMK4Q16566 473 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 BRMS1LQ5PSV4 323 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 CXorf57Q6NSI4 855 aaKnown RBP14.02□□□□□ -0.17
TRIM28-211ENST00000597968 FBXL22Q6P050 247 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 MMS22LQ6ZRQ5 1243 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 PRPF39Q86UA1 669 aaKnown RBP14.02□□□□□ -0.17
TRIM28-211ENST00000597968 TMPRSS12Q86WS5 348 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 APCDD1Q8J025 514 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 DEFB106AQ8N104 65 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 WDTC1Q8N5D0 677 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 PNPLA1Q8N8W4 532 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 FRS2Q8WU20 508 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 OR8D1Q8WZ84 308 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 RNF34Q969K3 372 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 CCDC114Q96M63 670 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 RPRD1AQ96P16 312 aaPredicted RBP14.02□□□□□ -0.17
TRIM28-211ENST00000597968 CPXM1Q96SM3 734 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 SERGEFQ9UGK8 458 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 SLCO3A1Q9UIG8 710 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 STAP1Q9ULZ2 295 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 TBC1D30Q9Y2I9 924 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 SLCO1B1Q9Y6L6 691 aa14.02□□□□□ -0.17
TRIM28-211ENST00000597968 COL5A1P20908 1838 aaPredicted RBP14.01□□□□□ -0.17
TRIM28-211ENST00000597968 IGF2RP11717 2491 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 CXorf51AA0A1B0GTR3 108 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 A0A1W2PR77 199 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 FAM47DPA6NHR8 397 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 MCF2LO15068 1137 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 PLRG1O43660 514 aaKnown RBP14.01□□□□□ -0.17
TRIM28-211ENST00000597968 DAB1O75553 588 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 F9P00740 461 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 IL1BP01584 269 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 ATXN1LP0C7T5 689 aaKnown RBP14.01□□□□□ -0.17
TRIM28-211ENST00000597968 PDGFRAP16234 1089 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 CTSOP43234 321 aaPredicted RBP14.01□□□□□ -0.17
TRIM28-211ENST00000597968 KRT83P78385 493 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 SLC6A3Q01959 620 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 ILKQ13418 452 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 AUHQ13825 339 aaKnown RBP14.01□□□□□ -0.17
TRIM28-211ENST00000597968 MAN2A1Q16706 1144 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 ARHGAP44Q17R89 818 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 CT47A1Q5JQC4 288 aaPredicted RBP14.01□□□□□ -0.17
TRIM28-211ENST00000597968 NAPEPLDQ6IQ20 393 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 NEK5Q6P3R8 708 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms