RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	IRAK1	P51617	712 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	METAP1	P53582	386 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	ADPRH	P54922	357 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	RACK1	P63244	317 aa	Known RBP	10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	CENPC	Q03188	943 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	MEA1	Q16626	185 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	ARHGAP44	Q17R89	818 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	TRIM65	Q6PJ69	517 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	TMPRSS7	Q7RTY8	843 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	CCAR2	Q8N163	923 aa	Known RBP	10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	ATP6V0D2	Q8N8Y2	350 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	PTPRN2	Q92932	1015 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	MED15	Q96RN5	788 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	CPXM1	Q96SM3	734 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	PRMT1	Q99873	361 aa	Known RBP	10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	AASDHPPT	Q9NRN7	309 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	DDIT4	Q9NX09	232 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	ADAMTS1	Q9UHI8	967 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	FZD4	Q9ULV1	537 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	RAX	Q9Y2V3	346 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	GPSM3	Q9Y4H4	160 aa		10.87	□□□□□ -0.67
LSM4-205	ENST00000597776	NYNRIN	Q9P2P1	1898 aa	Known RBP	10.87	□□□□□ -0.67
LSM4-205	ENST00000597776		A0A1B0GTQ1	180 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	KCNU1	A8MYU2	1149 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	C10orf142	B7Z368	130 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	GRAP2	O75791	330 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	IL1B	P01584	269 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	GOT1	P17174	413 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	C5AR1	P21730	350 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	GGCX	P38435	758 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	PPP2CB	P62714	309 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	PPP2CA	P67775	309 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	EIF4EBP2	Q13542	120 aa	Predicted RBP	10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	COL9A2	Q14055	689 aa	Predicted RBP	10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	ELAVL3	Q14576	367 aa	Known RBP	10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	SHB	Q15464	509 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	POM121L1P	Q3SYA9	428 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	CXorf57	Q6NSI4	855 aa	Known RBP	10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	DHRS13	Q6UX07	377 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	ENOSF1	Q7L5Y1	443 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	CREBRF	Q8IUR6	639 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	DEFB106A	Q8N104	65 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	WDTC1	Q8N5D0	677 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	OR52K2	Q8NGK3	314 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	OR14C36	Q8NHC7	312 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	FRS2	Q8WU20	508 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	RNF34	Q969K3	372 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	SLC2A13	Q96QE2	648 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	ELF4	Q99607	663 aa	Predicted RBP	10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	FTSJ1	Q9UET6	329 aa		10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	AJAP1	Q9UKB5	411 aa	Predicted RBP	10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	TP53BP1	Q12888	1972 aa	Predicted RBP	10.86	□□□□□ -0.67
LSM4-205	ENST00000597776	CABIN1	Q9Y6J0	2220 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776		A0A1B0GVM2	712 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776		A0A1W2PR77	199 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	TCAF2	A6NFQ2	919 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	ADH1B	P00325	375 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	ERBB2	P04626	1255 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	PNMA6A	P0CW24	399 aa	Predicted RBP	10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	ABCB4	P21439	1286 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	CD38	P28907	300 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	CCR1	P32246	355 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	DRD3	P35462	400 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	CCR5	P51681	352 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	CLDN6	P56747	220 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	CDK17	Q00537	523 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	SFSWAP	Q12872	951 aa	Known RBP	10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	NME3	Q13232	169 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	COL28A1	Q2UY09	1125 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	INAVA	Q3KP66	663 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	FBXL22	Q6P050	247 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	FAM183BP	Q6ZVS7	135 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	SND1	Q7KZF4	910 aa	Known RBP eCLIP	10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	C1orf131	Q8NDD1	294 aa	Known RBP	10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	SHC3	Q92529	594 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	SERAC1	Q96JX3	654 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	PPP1R13B	Q96KQ4	1090 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	RPRD1A	Q96P16	312 aa	Predicted RBP	10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	APEX2	Q9UBZ4	518 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	SLC12A6	Q9UHW9	1150 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	SARDH	Q9UL12	918 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	VANGL2	Q9ULK5	521 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	ATRX	P46100	2492 aa		10.85	□□□□□ -0.67
LSM4-205	ENST00000597776	APC2	O95996	2303 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	TBC1D3D	A0A087WVF3	549 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	TBC1D3I	A0A087WXS9	549 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	TBC1D3E	A0A087X179	549 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	TBC1D3K	A0A087X1G2	549 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	FAM170A	A1A519	330 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	TBC1D3F	A6NER0	549 aa	Predicted RBP	10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	TRABD2B	A6NFA1	517 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	TBC1D3L	B9A6J9	549 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	DFNA5	O60443	496 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	HSF2BP	O75031	334 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	RTN2	O75298	545 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	FGFR1OP	O95684	399 aa	Known RBP	10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	ITGAV	P06756	1048 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	TBC1D3H	P0C7X1	549 aa		10.84	□□□□□ -0.67

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