RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 CUTAO60888 179 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 RNGTTO60942 597 aaKnown RBP10.48□□□□□ -0.73
TRIM28-210ENST00000597618 TRIM49P0CI25 452 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 TRIM49CP0CI26 452 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 KRT13P13646 458 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 MAT2AP31153 395 aaKnown RBP10.48□□□□□ -0.73
TRIM28-210ENST00000597618 DRD3P35462 400 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 CTSOP43234 321 aaPredicted RBP10.48□□□□□ -0.73
TRIM28-210ENST00000597618 DUSP3P51452 185 aaPredicted RBP10.48□□□□□ -0.73
TRIM28-210ENST00000597618 RAD23BP54727 409 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 ENPEPQ07075 957 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 SRSF1Q07955 248 aaKnown RBP eCLIP10.48□□□□□ -0.73
TRIM28-210ENST00000597618 PPP3CAQ08209 521 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 BST2Q10589 180 aaKnown RBP10.48□□□□□ -0.73
TRIM28-210ENST00000597618 STK4Q13043 487 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 CUL4AQ13619 759 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 KIAA1614Q5VZ46 1190 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 SHC4Q6S5L8 630 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.48□□□□□ -0.73
TRIM28-210ENST00000597618 TMC6Q7Z403 805 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 DSG4Q86SJ6 1040 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 SCML4Q8N228 414 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 TATDN2Q93075 761 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 GRAMD1AQ96CP6 724 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 KLHDC7BQ96G42 594 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 SPAG5Q96R06 1193 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 FAM117AQ9C073 453 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 TMEM8AQ9HCN3 771 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 CNGB3Q9NQW8 809 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 KLHL11Q9NVR0 708 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 NLGN3Q9NZ94 848 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 TJP2Q9UDY2 1190 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 IL17BQ9UHF5 180 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 TSPAN16Q9UKR8 245 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 TEX15Q9BXT5 2789 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 CALUO43852 315 aaPredicted RBP10.47□□□□□ -0.73
TRIM28-210ENST00000597618 RTN2O75298 545 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 LUC7L3O95232 432 aaKnown RBP10.47□□□□□ -0.73
TRIM28-210ENST00000597618 SETSIPP0DME0 302 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 GTF2H1P32780 548 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 NNMTP40261 264 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 AFMP43652 599 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 TBX4P57082 545 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 RPS24P62847 133 aaKnown RBP10.47□□□□□ -0.73
TRIM28-210ENST00000597618 SKOR1P84550 965 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 KCNMA1Q12791 1236 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 ISXQ2M1V0 245 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 SGO2Q562F6 1265 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 FSCBQ5H9T9 825 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 C3orf38Q5JPI3 329 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 FAM46CQ5VWP2 391 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 NADSYN1Q6IA69 706 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 CCDC81Q6ZN84 652 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 MMS22LQ6ZRQ5 1243 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 LURAP1LQ8IV03 231 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 TMEM145Q8NBT3 493 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 MAPK15Q8TD08 544 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 KCTD13Q8WZ19 329 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 PTPRN2Q92932 1015 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.47□□□□□ -0.73
TRIM28-210ENST00000597618 MMRN2Q9H8L6 949 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 UPF2Q9HAU5 1272 aaKnown RBP10.47□□□□□ -0.73
TRIM28-210ENST00000597618 UCKL1Q9NWZ5 548 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 SLCO3A1Q9UIG8 710 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 SATB2Q9UPW6 733 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 MTMR6Q9Y217 621 aa10.47□□□□□ -0.73
TRIM28-210ENST00000597618 NEMP2A6NFY4 417 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 RIOK3O14730 519 aaKnown RBP10.46□□□□□ -0.73
TRIM28-210ENST00000597618 KLRC4O43908 158 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 PIAS2O75928 621 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 YEATS4O95619 227 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 NTRK1P04629 796 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 THEGLP0DJG4 465 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 PDIA4P13667 645 aaKnown RBP10.46□□□□□ -0.73
TRIM28-210ENST00000597618 NR2F2P24468 414 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 STK19P49842 368 aaPredicted RBP10.46□□□□□ -0.73
TRIM28-210ENST00000597618 DAOAP59103 153 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 NFATC3Q12968 1075 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 MS4A13Q5J8X5 152 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 AGBL4Q5VU57 503 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 KRT39Q6A163 491 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 FAM186BQ8IYM0 893 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 CEP57L1Q8IYX8 460 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 OR8D1Q8WZ84 308 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 IRGQQ8WZA9 623 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 RPL10LQ96L21 214 aaKnown RBP10.46□□□□□ -0.73
TRIM28-210ENST00000597618 APOLD1Q96LR9 279 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 ZNF396Q96N95 335 aaPredicted RBP10.46□□□□□ -0.73
TRIM28-210ENST00000597618 SLC46A1Q96NT5 459 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 SERPINB11Q96P15 392 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 DUSP23Q9BVJ7 150 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 TRIM4Q9C037 500 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 NUCKS1Q9H1E3 243 aaKnown RBP10.46□□□□□ -0.73
TRIM28-210ENST00000597618 PREBQ9HCU5 417 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 FAM13BQ9NYF5 915 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 NCKIPSDQ9NZQ3 722 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 TRAF3IP3Q9Y228 551 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 CA5BQ9Y2D0 317 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 PCDHGA8Q9Y5G5 932 aa10.46□□□□□ -0.73
TRIM28-210ENST00000597618 BSNQ9UPA5 3926 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms