RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 NELL2Q99435 816 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 ACE2Q9BYF1 805 aaPredicted RBP10.87□□□□□ -0.67
LIG1-210ENST00000596332 LRRC19Q9H756 370 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 LUC7LQ9NQ29 371 aaKnown RBP10.87□□□□□ -0.67
LIG1-210ENST00000596332 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.87□□□□□ -0.67
LIG1-210ENST00000596332 KLHL11Q9NVR0 708 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 ELOVL2Q9NXB9 296 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 GGA2Q9UJY4 613 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 GUCA1BQ9UMX6 200 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 PCDHA3Q9Y5H8 950 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 MIA3Q5JRA6 1907 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 MUC22E2RYF6 1773 aaPredicted RBP10.86□□□□□ -0.67
LIG1-210ENST00000596332 CHURC1-FNTBB4DL54 471 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 WASH3PC4AMC7 463 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 DLL1O00548 723 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 FANCGO15287 622 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 C7P10643 843 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 GLDCP23378 1020 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 CTNNA2P26232 953 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 EPHB2P29323 1055 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 HTR7P34969 479 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 CTNNA1P35221 906 aaKnown RBP10.86□□□□□ -0.67
LIG1-210ENST00000596332 ACVRL1P37023 503 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 NUMBP49757 651 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 SLC10A2Q12908 348 aaPredicted RBP10.86□□□□□ -0.67
LIG1-210ENST00000596332 UBXN2BQ14CS0 331 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 PITRM1Q5JRX3 1037 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 DCAF12L1Q5VU92 463 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 EGFLAMQ63HQ2 1017 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 AADACL2Q6P093 401 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 C1orf228Q6PIY5 440 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 MFSD7Q6UXD7 560 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 LRRC31Q6UY01 552 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 DAAM2Q86T65 1068 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 SETD3Q86TU7 594 aaPredicted RBP10.86□□□□□ -0.67
LIG1-210ENST00000596332 SUGP1Q8IWZ8 645 aaKnown RBP10.86□□□□□ -0.67
LIG1-210ENST00000596332 FBXL6Q8N531 539 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 IL17RCQ8NAC3 791 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 FLCNQ8NFG4 579 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 OR7D4Q8NG98 312 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 KIAA1524Q8TCG1 905 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 ARHGEF2Q92974 986 aaKnown RBP10.86□□□□□ -0.67
LIG1-210ENST00000596332 PBXIP1Q96AQ6 731 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 HES6Q96HZ4 224 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 CALR3Q96L12 384 aaKnown RBP10.86□□□□□ -0.67
LIG1-210ENST00000596332 CHRDQ9H2X0 955 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 RETREG1Q9H6L5 497 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 LZTFL1Q9NQ48 299 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 KCND1Q9NSA2 647 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 KIAA1522Q9P206 1035 aaPredicted RBP10.86□□□□□ -0.67
LIG1-210ENST00000596332 DNAI1Q9UI46 699 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 PACSIN2Q9UNF0 486 aaPredicted RBP10.86□□□□□ -0.67
LIG1-210ENST00000596332 SIT1Q9Y3P8 196 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 ACTL7AQ9Y615 435 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 CHD5Q8TDI0 1954 aa10.86□□□□□ -0.67
LIG1-210ENST00000596332 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.85□□□□□ -0.67
LIG1-210ENST00000596332 ILVBLA1L0T0 632 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 TBC1D3BA6NDS4 549 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 ZNF487B1APH4 448 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 H0Y626 953 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 EEF2KO00418 725 aaKnown RBP10.85□□□□□ -0.67
LIG1-210ENST00000596332 SNAP91O60641 907 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 RNF40O75150 1001 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 ZNF821O75541 412 aaPredicted RBP10.85□□□□□ -0.67
LIG1-210ENST00000596332 IPO7O95373 1038 aaKnown RBP10.85□□□□□ -0.67
LIG1-210ENST00000596332 FTCDO95954 541 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 MT-CO1P00395 513 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 APODP05090 189 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 KRT7P08729 469 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 TDGF1P13385 188 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 AVPR2P30518 371 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 CDKN2BP42772 138 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 MAPKAPK2P49137 400 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 CDH6P55285 790 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 AMPD2Q01433 879 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 GNA12Q03113 381 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 GRSF1Q12849 480 aaKnown RBP eCLIP10.85□□□□□ -0.67
LIG1-210ENST00000596332 ZNF177Q13360 481 aaPredicted RBP10.85□□□□□ -0.67
LIG1-210ENST00000596332 PDK2Q15119 407 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 HADHQ16836 314 aaKnown RBP10.85□□□□□ -0.67
LIG1-210ENST00000596332 C2orf27AQ580R0 203 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 ANKRD20A8PQ5CZ79 823 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 PPP6R3Q5H9R7 873 aaPredicted RBP10.85□□□□□ -0.67
LIG1-210ENST00000596332 RNF219Q5W0B1 726 aaPredicted RBP10.85□□□□□ -0.67
LIG1-210ENST00000596332 MBLAC2Q68D91 279 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 RWDD4Q6NW29 188 aaKnown RBP10.85□□□□□ -0.67
LIG1-210ENST00000596332 TMEM92Q6UXU6 159 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 VSIG1Q86XK7 387 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 RHOT1Q8IXI2 618 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 KATNAL2Q8IYT4 538 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 ANP32BQ92688 251 aaKnown RBP10.85□□□□□ -0.67
LIG1-210ENST00000596332 RNF157Q96PX1 679 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 EPAS1Q99814 870 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 LRFN3Q9BTN0 628 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 SLC39A8Q9C0K1 460 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 TMEM245Q9H330 911 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 THAP10Q9P2Z0 257 aaPredicted RBP10.85□□□□□ -0.67
LIG1-210ENST00000596332 SLCO3A1Q9UIG8 710 aa10.85□□□□□ -0.67
LIG1-210ENST00000596332 A0A1W2PQF6 199 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 PRR33A8MZF0 331 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms