RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 SCAPQ12770 1279 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 MTA1Q13330 715 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 ZNF177Q13360 481 aaPredicted RBP11.47□□□□□ -0.57
VRK3-210ENST00000596121 CAMK2GQ13555 558 aaPredicted RBP11.47□□□□□ -0.57
VRK3-210ENST00000596121 TRIM14Q14142 442 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 CA9Q16790 459 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 PLK5Q496M5 336 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 FNDC3BQ53EP0 1204 aaKnown RBP11.47□□□□□ -0.57
VRK3-210ENST00000596121 CCDC122Q5T0U0 273 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 TTC39BQ5VTQ0 682 aaPredicted RBP11.47□□□□□ -0.57
VRK3-210ENST00000596121 RNF219Q5W0B1 726 aaPredicted RBP11.47□□□□□ -0.57
VRK3-210ENST00000596121 PPP1R2P3Q6NXS1 205 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 SCYL2Q6P3W7 929 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 ALKBH5Q6P6C2 394 aaKnown RBP11.47□□□□□ -0.57
VRK3-210ENST00000596121 SERPINA13PQ6UXR4 307 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 NLRP14Q86W24 1093 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 CPNE8Q86YQ8 564 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 BTBD6Q96KE9 485 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 RPL10LQ96L21 214 aaKnown RBP11.47□□□□□ -0.57
VRK3-210ENST00000596121 PACSIN1Q9BY11 444 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 TMEM51Q9NW97 253 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 GPATCH2LQ9NWQ4 482 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 BCCIPQ9P287 314 aaKnown RBP eCLIP11.47□□□□□ -0.57
VRK3-210ENST00000596121 OR12D3Q9UGF7 316 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 FZD10Q9ULW2 581 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 PLA2G4CQ9UP65 541 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 PAXBP1Q9Y5B6 917 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 CKAP5Q14008 2032 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 CFAP54Q96N23 3096 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 GON4LQ3T8J9 2241 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 NPC1O15118 1278 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 SNAP91O60641 907 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 ALDH1A2O94788 518 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 LRIG2O94898 1065 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 MT-CO1P00395 513 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 CYP1A2P05177 515 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 ATP5BP06576 529 aaKnown RBP11.46□□□□□ -0.57
VRK3-210ENST00000596121 MYBL1P10243 752 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 C7P10643 843 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 VAV1P15498 845 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 GLDCP23378 1020 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 PSMA2P25787 234 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 ECT2LQ008S8 904 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 NRG1Q02297 640 aaPredicted RBP11.46□□□□□ -0.57
VRK3-210ENST00000596121 SEMA3BQ13214 749 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 MAPK8IP2Q13387 824 aaPredicted RBP11.46□□□□□ -0.57
VRK3-210ENST00000596121 USP39Q53GS9 565 aaKnown RBP11.46□□□□□ -0.57
VRK3-210ENST00000596121 LRRC31Q6UY01 552 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 CEP68Q76N32 757 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 SLFN11Q7Z7L1 901 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 TMPRSS6Q8IU80 811 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 PGBD3Q8N328 593 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 ZNF557Q8N988 423 aaPredicted RBP11.46□□□□□ -0.57
VRK3-210ENST00000596121 TC2NQ8N9U0 490 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 OR7D4Q8NG98 312 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 ZC3H10Q96K80 434 aaKnown RBP11.46□□□□□ -0.57
VRK3-210ENST00000596121 ZYG11BQ9C0D3 744 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 PARD6AQ9NPB6 346 aa11.46□□□□□ -0.57
VRK3-210ENST00000596121 DOCK4Q8N1I0 1966 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 IGHV1OR15-9A0A0B4J2B8 117 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 ANKRD62A6NC57 917 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 AKR1B15C9JRZ8 316 aaPredicted RBP11.45□□□□□ -0.58
VRK3-210ENST00000596121 SIN3BO75182 1162 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 LRCH4O75427 683 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 ASLP04424 464 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 SRPRAP08240 638 aaKnown RBP11.45□□□□□ -0.58
VRK3-210ENST00000596121 IL1R2P27930 398 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 MIPP30301 263 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 L1CAMP32004 1257 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 SLC12A1Q13621 1099 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 SLC18A3Q16572 532 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 HNRNPA1L2Q32P51 320 aaKnown RBP11.45□□□□□ -0.58
VRK3-210ENST00000596121 ARL13BQ3SXY8 428 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 C9orf64Q5T6V5 341 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 TXNRD3NBQ6F5E7 133 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 CACUL1Q86Y37 369 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 CCDC117Q8IWD4 279 aaPredicted RBP11.45□□□□□ -0.58
VRK3-210ENST00000596121 DEFB119Q8N690 84 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 OR2T3Q8NH03 318 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 FNIP1Q8TF40 1166 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 FRS2Q8WU20 508 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 RUBCNQ92622 972 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 FAM129BQ96TA1 746 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 NUP85Q9BW27 656 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 NOL6Q9H6R4 1146 aaKnown RBP11.45□□□□□ -0.58
VRK3-210ENST00000596121 PRDM16Q9HAZ2 1276 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 SPTLC3Q9NUV7 552 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 PPARGC1AQ9UBK2 798 aaKnown RBP11.45□□□□□ -0.58
VRK3-210ENST00000596121 PCSK1NQ9UHG2 260 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 CYP8B1Q9UNU6 501 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 ACTL7AQ9Y615 435 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 SPAG17Q6Q759 2223 aa11.45□□□□□ -0.58
VRK3-210ENST00000596121 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 SSU72P8A0A1W2PR75 194 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 K7ERQ8 282 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 SMAD6O43541 496 aaKnown RBP11.44□□□□□ -0.58
VRK3-210ENST00000596121 SYNCRIPO60506 623 aaKnown RBP11.44□□□□□ -0.58
VRK3-210ENST00000596121 ZMPSTE24O75844 475 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 CD160O95971 181 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 RHOCP08134 193 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms