RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 SCN5AQ14524 2016 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 CARNS1A5YM72 827 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 CCT8L1PA6NM43 557 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 TBKBP1A7MCY6 615 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 FOXO6A8MYZ6 492 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 TBC1D4O60343 1298 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 LPXNO60711 386 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 C1QAP02745 245 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 POLBP06746 335 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 GALTP07902 379 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 HAPLN1P10915 354 aaPredicted RBP11.53□□□□□ -0.56
LIG3-204ENST00000585740 CPB1P15086 417 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 MGAT1P26572 445 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 BMP8BP34820 402 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 RPA3P35244 121 aaPredicted RBP11.53□□□□□ -0.56
LIG3-204ENST00000585740 CCNFP41002 786 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 NEK3P51956 506 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 KPNA1P52294 538 aaPredicted RBP11.53□□□□□ -0.56
LIG3-204ENST00000585740 TBX4P57082 545 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 MTM1Q13496 603 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 GPNMBQ14956 572 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 ANO4Q32M45 955 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 LACTB2Q53H82 288 aaPredicted RBP11.53□□□□□ -0.56
LIG3-204ENST00000585740 NAPEPLDQ6IQ20 393 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 CASC4Q6P4E1 433 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 LVRNQ6Q4G3 990 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 TIFABQ6ZNK6 161 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 SPATA21Q7Z572 469 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 PRPF39Q86UA1 669 aaKnown RBP11.53□□□□□ -0.56
LIG3-204ENST00000585740 CHSY1Q86X52 802 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 CEP57Q86XR8 500 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 KLHDC8BQ8IXV7 354 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 NPWQ8N729 165 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 RTL3Q8N8U3 475 aaKnown RBP11.53□□□□□ -0.56
LIG3-204ENST00000585740 ACMSDQ8TDX5 336 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 FATE1Q969F0 183 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 FBXO32Q969P5 355 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 SLC39A13Q96H72 371 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 PAWRQ96IZ0 340 aaKnown RBP11.53□□□□□ -0.56
LIG3-204ENST00000585740 FCRL2Q96LA5 508 aaPredicted RBP11.53□□□□□ -0.56
LIG3-204ENST00000585740 PITPNM3Q9BZ71 974 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 IQCGQ9H095 443 aaKnown RBP11.53□□□□□ -0.56
LIG3-204ENST00000585740 SIK2Q9H0K1 926 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 VPS11Q9H270 941 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 KIF9Q9HAQ2 790 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 NMUR1Q9HB89 426 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 MLXIPLQ9NP71 852 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 CASS4Q9NQ75 786 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 FGFR1OP2Q9NVK5 253 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 PPARGC1AQ9UBK2 798 aaKnown RBP11.53□□□□□ -0.56
LIG3-204ENST00000585740 SFMBT1Q9UHJ3 866 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 ARL2BPQ9Y2Y0 163 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 AAR2Q9Y312 384 aaKnown RBP11.53□□□□□ -0.56
LIG3-204ENST00000585740 STARD13Q9Y3M8 1113 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 SNX10Q9Y5X0 201 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 TET1Q8NFU7 2136 aa11.53□□□□□ -0.56
LIG3-204ENST00000585740 WDR27A2RRH5 827 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 MTMR11A4FU01 709 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 ARHGAP42A6NI28 874 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 TRIM49D1C9J1S8 452 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 E9PAM4 449 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 KCNK1O00180 336 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 COPEO14579 308 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 ZBTB24O43167 697 aaPredicted RBP11.52□□□□□ -0.57
LIG3-204ENST00000585740 CACNG3O60359 315 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 ANXA9O76027 345 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 AMHP03971 560 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 GSTA1P08263 222 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 FOXN2P32314 431 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 NDST2P52849 883 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 MLLT6P55198 1093 aaPredicted RBP11.52□□□□□ -0.57
LIG3-204ENST00000585740 SESN2P58004 480 aaPredicted RBP11.52□□□□□ -0.57
LIG3-204ENST00000585740 MGAT5Q09328 741 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 TRIP4Q15650 581 aaPredicted RBP11.52□□□□□ -0.57
LIG3-204ENST00000585740 SLC1A5Q15758 541 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 DDR2Q16832 855 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 KCTD11Q693B1 232 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 ANKRD33Q7Z3H0 272 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.52□□□□□ -0.57
LIG3-204ENST00000585740 C7orf61Q8IZ16 206 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 MPP5Q8N3R9 675 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 ZNF276Q8N554 614 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 GBP7Q8N8V2 638 aaPredicted RBP11.52□□□□□ -0.57
LIG3-204ENST00000585740 TCP10LQ8TDR4 215 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 PPM1EQ8WY54 764 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 TOX2Q96NM4 488 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 TTPALQ9BTX7 342 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 GPR62Q9BZJ7 368 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 HIPK3Q9H422 1215 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 RETREG1Q9H6L5 497 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 GMIPQ9P107 970 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 KLHL14Q9P2G3 628 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 NEU3Q9UQ49 428 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 HS3ST4Q9Y661 456 aa11.52□□□□□ -0.57
LIG3-204ENST00000585740 CXorf49A8MYA2 514 aaPredicted RBP11.51□□□□□ -0.57
LIG3-204ENST00000585740 DFFAO00273 331 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 MATN3O15232 486 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 PQBP1O60828 265 aaKnown RBP11.51□□□□□ -0.57
LIG3-204ENST00000585740 USP1O94782 785 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 FSBPO95073 299 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms