RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 HSPA12BQ96MM6 686 aa24.6■■□□□ 1.53
SHMT1-206ENST00000579558 HAPLN3Q96S86 360 aa24.6■■□□□ 1.53
SHMT1-206ENST00000579558 PPP1R9BQ96SB3 815 aa24.6■■□□□ 1.53
SHMT1-206ENST00000579558 WSB2Q9NYS7 404 aaPredicted RBP24.6■■□□□ 1.53
SHMT1-206ENST00000579558 SLC30A4O14863 429 aa24.59■■□□□ 1.53
SHMT1-206ENST00000579558 CNTN5O94779 1100 aa24.59■■□□□ 1.53
SHMT1-206ENST00000579558 IGLV3-19P01714 112 aa24.59■■□□□ 1.53
SHMT1-206ENST00000579558 PTPN9P43378 593 aa24.59■■□□□ 1.53
SHMT1-206ENST00000579558 RPS14P62263 151 aaKnown RBP24.59■■□□□ 1.53
SHMT1-206ENST00000579558 SULT2A1Q06520 285 aa24.59■■□□□ 1.53
SHMT1-206ENST00000579558 ALFQ53S48 1182 aa24.59■■□□□ 1.53
SHMT1-206ENST00000579558 SFMBT2Q5VUG0 894 aa24.59■■□□□ 1.53
SHMT1-206ENST00000579558 ACAD10Q6JQN1 1059 aa24.59■■□□□ 1.53
SHMT1-206ENST00000579558 OR52K2Q8NGK3 314 aa24.59■■□□□ 1.53
SHMT1-206ENST00000579558 EDEM2Q9BV94 578 aa24.59■■□□□ 1.53
SHMT1-206ENST00000579558 TMEM74BQ9NUR3 256 aa24.59■■□□□ 1.53
SHMT1-206ENST00000579558 SLCO3A1Q9UIG8 710 aa24.59■■□□□ 1.53
SHMT1-206ENST00000579558 PILRBQ9UKJ0 227 aa24.59■■□□□ 1.53
SHMT1-206ENST00000579558 ITIH6Q6UXX5 1313 aa24.59■■□□□ 1.53
SHMT1-206ENST00000579558 TTC34A8MYJ7 566 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 E9PAM4 449 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 SIN3BO75182 1162 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 RFC1P35251 1148 aaPredicted RBP24.58■■□□□ 1.53
SHMT1-206ENST00000579558 NNMTP40261 264 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 STK19P49842 368 aaPredicted RBP24.58■■□□□ 1.53
SHMT1-206ENST00000579558 LIMK1P53667 647 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 ARID5BQ14865 1188 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 RAB6CQ53S08 254 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 SH3PXD2AQ5TCZ1 1133 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 ZNF776Q68DI1 518 aaPredicted RBP24.58■■□□□ 1.53
SHMT1-206ENST00000579558 DNAJC24Q6P3W2 148 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 STRADAQ7RTN6 431 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 ERMP1Q7Z2K6 904 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 FAM124AQ86V42 546 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 ALG14Q96F25 216 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 ZNF419Q96HQ0 510 aaPredicted RBP24.58■■□□□ 1.53
SHMT1-206ENST00000579558 FEM1AQ9BSK4 669 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 SYT11Q9BT88 431 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 NUP58Q9BVL2 599 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 GPR174Q9BXC1 333 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 EDEM3Q9BZQ6 932 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 TTYH3Q9C0H2 523 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 RAB6CQ9H0N0 254 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 EVLQ9UI08 416 aaPredicted RBP24.58■■□□□ 1.53
SHMT1-206ENST00000579558 VPS28Q9UK41 221 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 TBC1D30Q9Y2I9 924 aa24.58■■□□□ 1.53
SHMT1-206ENST00000579558 GON4LQ3T8J9 2241 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 EDDM13A0A1B0GTR0 161 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 LNP1A1A4G5 178 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 SIGLEC16A6NMB1 481 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 DRGXA6NNA5 263 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 SRGAP2O75044 1071 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 DNTTP04053 509 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 RHOCP08134 193 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 GPD1P21695 349 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 HOXD12P35452 270 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 UBASH3AP57075 661 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 ZBTB16Q05516 673 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 ARL13BQ3SXY8 428 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 TRIM61Q5EBN2 209 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 STPG1Q5TH74 334 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 PEAR1Q5VY43 1037 aaPredicted RBP24.57■■□□□ 1.52
SHMT1-206ENST00000579558 FOXJ1Q92949 421 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 MUC3BQ9H195 1237 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 RSPH9Q9H1X1 276 aaPredicted RBP24.57■■□□□ 1.52
SHMT1-206ENST00000579558 AIPL1Q9NZN9 384 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 MPP6Q9NZW5 540 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 CACNA1AO00555 2505 aa24.57■■□□□ 1.52
SHMT1-206ENST00000579558 IGLV3-10A0A075B6K4 115 aa24.56■■□□□ 1.52
SHMT1-206ENST00000579558 TARSL2A2RTX5 802 aaKnown RBP24.56■■□□□ 1.52
SHMT1-206ENST00000579558 RNASEH1O60930 286 aaKnown RBP24.56■■□□□ 1.52
SHMT1-206ENST00000579558 C7P10643 843 aa24.56■■□□□ 1.52
SHMT1-206ENST00000579558 IRX4P78413 519 aa24.56■■□□□ 1.52
SHMT1-206ENST00000579558 TTC31Q49AM3 519 aaPredicted RBP24.56■■□□□ 1.52
SHMT1-206ENST00000579558 FIGNQ5HY92 759 aa24.56■■□□□ 1.52
SHMT1-206ENST00000579558 SYCP2LQ5T4T6 812 aa24.56■■□□□ 1.52
SHMT1-206ENST00000579558 C9orf64Q5T6V5 341 aa24.56■■□□□ 1.52
SHMT1-206ENST00000579558 E4F1Q66K89 784 aaPredicted RBP24.56■■□□□ 1.52
SHMT1-206ENST00000579558 PPP1R2P3Q6NXS1 205 aa24.56■■□□□ 1.52
SHMT1-206ENST00000579558 WDR59Q6PJI9 974 aa24.56■■□□□ 1.52
SHMT1-206ENST00000579558 TFAP2DQ7Z6R9 452 aa24.56■■□□□ 1.52
SHMT1-206ENST00000579558 RGL4Q8IZJ4 473 aa24.56■■□□□ 1.52
SHMT1-206ENST00000579558 MCOLN2Q8IZK6 566 aa24.56■■□□□ 1.52
SHMT1-206ENST00000579558 FAM172AQ8WUF8 416 aa24.56■■□□□ 1.52
SHMT1-206ENST00000579558 NUSAP1Q9BXS6 441 aaKnown RBP24.56■■□□□ 1.52
SHMT1-206ENST00000579558 HAUS4Q9H6D7 363 aa24.56■■□□□ 1.52
SHMT1-206ENST00000579558 TAS2R14Q9NYV8 317 aa24.56■■□□□ 1.52
SHMT1-206ENST00000579558 SLC25A13Q9UJS0 675 aa24.56■■□□□ 1.52
SHMT1-206ENST00000579558 OR51B4Q9Y5P0 310 aa24.56■■□□□ 1.52
SHMT1-206ENST00000579558 TCRBV5S1A1TA0A578 114 aa24.55■■□□□ 1.52
SHMT1-206ENST00000579558 DCDC2BA2VCK2 349 aa24.55■■□□□ 1.52
SHMT1-206ENST00000579558 ANKRD62A6NC57 917 aa24.55■■□□□ 1.52
SHMT1-206ENST00000579558 MEI4A8MW99 385 aa24.55■■□□□ 1.52
SHMT1-206ENST00000579558 TMCO5BA8MYB1 307 aa24.55■■□□□ 1.52
SHMT1-206ENST00000579558 CFIP05156 583 aa24.55■■□□□ 1.52
SHMT1-206ENST00000579558 ADRA1BP35368 520 aa24.55■■□□□ 1.52
SHMT1-206ENST00000579558 FOXK2Q01167 660 aa24.55■■□□□ 1.52
SHMT1-206ENST00000579558 KLHL30Q0D2K2 578 aa24.55■■□□□ 1.52
SHMT1-206ENST00000579558 DUOXA1Q1HG43 343 aa24.55■■□□□ 1.52
SHMT1-206ENST00000579558 IL31Q6EBC2 164 aa24.55■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms