RNA–Protein interactions for RNA: ENST00000578706.5

UBB-208, Transcript of ubiquitin B, human

TSL 3

Gene UBB, Length 500 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBB-208	ENST00000578706	CACNG3	O60359	315 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	DFNA5	O60443	496 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	GREM1	O60565	184 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	CS	O75390	466 aa	Known RBP	6.54	□□□□□ -1.36
UBB-208	ENST00000578706	GCNT3	O95395	438 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	LCA5L	O95447	670 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	NR3C1	P04150	777 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	CISD3	P0C7P0	127 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	C7	P10643	843 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	EPB41	P11171	864 aa	Known RBP	6.54	□□□□□ -1.36
UBB-208	ENST00000578706	TYR	P14679	529 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	CD27	P26842	260 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	DGKG	P49619	791 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	KLK7	P49862	253 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	CASP5	P51878	434 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	IFRD2	Q12894	506 aa	Predicted RBP	6.54	□□□□□ -1.36
UBB-208	ENST00000578706	ORC1	Q13415	861 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	CLCA4	Q14CN2	919 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	E2F5	Q15329	346 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	SPA17	Q15506	151 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	GLIPR1L2	Q4G1C9	344 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	ZNF569	Q5MCW4	686 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	SCARA3	Q6AZY7	606 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	XKR5	Q6UX68	686 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	CRELD2	Q6UXH1	353 aa	Predicted RBP	6.54	□□□□□ -1.36
UBB-208	ENST00000578706	TPGS1	Q6ZTW0	290 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	KIAA1328	Q86T90	577 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	PTRH1	Q86Y79	214 aa	Known RBP	6.54	□□□□□ -1.36
UBB-208	ENST00000578706	NUP93	Q8N1F7	819 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	OVCA2	Q8WZ82	227 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	UBXN4	Q92575	508 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	JAKMIP2	Q96AA8	810 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	PCED1B	Q96HM7	432 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	CCDC42	Q96M95	316 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	SLC6A18	Q96N87	628 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	SLC46A1	Q96NT5	459 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	MMS19	Q96T76	1030 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	NAPG	Q99747	312 aa	Predicted RBP	6.54	□□□□□ -1.36
UBB-208	ENST00000578706	FAM213A	Q9BRX8	229 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	LUC7L	Q9NQ29	371 aa	Known RBP	6.54	□□□□□ -1.36
UBB-208	ENST00000578706	PLCB1	Q9NQ66	1216 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	CRTAC1	Q9NQ79	661 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	6.54	□□□□□ -1.36	3e-6	■■■□□ 18
UBB-208	ENST00000578706	FAM207A	Q9NSI2	230 aa	Predicted RBP	6.54	□□□□□ -1.36
UBB-208	ENST00000578706	MYO6	Q9UM54	1294 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	SATB2	Q9UPW6	733 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	PLAA	Q9Y263	795 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	REXO2	Q9Y3B8	237 aa	Known RBP	6.54	□□□□□ -1.36
UBB-208	ENST00000578706	DAAM1	Q9Y4D1	1078 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	PCDHB13	Q9Y5F0	798 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	MYH11	P35749	1972 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	HIVEP3	Q5T1R4	2406 aa		6.54	□□□□□ -1.36
UBB-208	ENST00000578706	DOCK9	Q9BZ29	2069 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	LRRC53	A6NM62	1247 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	C10orf142	B7Z368	130 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	TRIM38	O00635	465 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	NPC1	O15118	1278 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	FANCG	O15287	622 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	LZTS3	O60299	673 aa	Predicted RBP	6.53	□□□□□ -1.36
UBB-208	ENST00000578706	OPA1	O60313	960 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	NOBOX	O60393	691 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	PPFIA2	O75334	1257 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	PRPF6	O94906	941 aa	Known RBP	6.53	□□□□□ -1.36
UBB-208	ENST00000578706	RTN3	O95197	1032 aa	Predicted RBP	6.53	□□□□□ -1.36
UBB-208	ENST00000578706	LDHA	P00338	332 aa	Known RBP	6.53	□□□□□ -1.36
UBB-208	ENST00000578706	ACO1	P21399	889 aa	Known RBP	6.53	□□□□□ -1.36
UBB-208	ENST00000578706	ABCB4	P21439	1286 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	PRKCH	P24723	683 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	COL8A1	P27658	744 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	GRN	P28799	593 aa	Known RBP	6.53	□□□□□ -1.36
UBB-208	ENST00000578706	HOXD13	P35453	343 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	PSMC2	P35998	433 aa	Known RBP	6.53	□□□□□ -1.36
UBB-208	ENST00000578706	GNL1	P36915	607 aa	Predicted RBP	6.53	□□□□□ -1.36
UBB-208	ENST00000578706	VAV2	P52735	878 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	SNRPF	P62306	86 aa	Known RBP	6.53	□□□□□ -1.36
UBB-208	ENST00000578706	KCNMA1	Q12791	1236 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	KIF5A	Q12840	1032 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	TBR1	Q16650	682 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	WHAMMP3	Q1A5X7	153 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	MDH1B	Q5I0G3	518 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	C3orf38	Q5JPI3	329 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	CCDC122	Q5T0U0	273 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	HTR3D	Q70Z44	454 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	RRAGA	Q7L523	313 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	ZNF720	Q7Z2F6	126 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	ADAT2	Q7Z6V5	191 aa	Known RBP	6.53	□□□□□ -1.36
UBB-208	ENST00000578706	SLC9A9	Q8IVB4	645 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	SLC35F6	Q8N357	371 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	CEP112	Q8N8E3	955 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	6.53	□□□□□ -1.36
UBB-208	ENST00000578706	RBBP8NL	Q8NC74	664 aa	Predicted RBP	6.53	□□□□□ -1.36
UBB-208	ENST00000578706	ZNF564	Q8TBZ8	553 aa	Predicted RBP	6.53	□□□□□ -1.36
UBB-208	ENST00000578706	TMEM174	Q8WUU8	243 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	UCMA	Q8WVF2	138 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	HTR3C	Q8WXA8	447 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	FBXO32	Q969P5	355 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	SGF29	Q96ES7	293 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	HPDL	Q96IR7	371 aa		6.53	□□□□□ -1.36
UBB-208	ENST00000578706	CCNL2	Q96S94	520 aa	Predicted RBP	6.53	□□□□□ -1.36
UBB-208	ENST00000578706	ARHGAP9	Q9BRR9	750 aa		6.53	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms