RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 SERPINB4P48594 390 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 KCTD11Q693B1 232 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 NDUFAF2Q8N183 169 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 ATPAF2Q8N5M1 289 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.37□□□□□ -0.11
VPS33B-208ENST00000574755 USP33Q8TEY7 942 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 TBC1D31Q96DN5 1066 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 B3GALT6Q96L58 329 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 MLPHQ9BV36 600 aaPredicted RBP14.37□□□□□ -0.11
VPS33B-208ENST00000574755 LRRC40Q9H9A6 602 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 NPHS2Q9NP85 383 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 UBP1Q9NZI7 540 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 TXNDC16Q9P2K2 825 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 SCML2Q9UQR0 700 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 PLLPQ9Y342 182 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 TROVE2P10155 538 aaKnown RBP eCLIP14.37□□□□□ -0.11
VPS33B-208ENST00000574755 HTR7P34969 479 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 ZNF33AQ06730 810 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 BFSP2Q13515 415 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 GALNTL6Q49A17 601 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 SPANXN3Q5MJ09 141 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 PACS1Q6VY07 963 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 ARHGAP36Q6ZRI8 547 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 RASSF3Q86WH2 238 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 CERS2Q96G23 380 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 C8orf48Q96LL4 319 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 TSSK1BQ9BXA7 367 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 SLC40A1Q9NP59 571 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 CASS4Q9NQ75 786 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 MKS1Q9NXB0 559 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 MAGED2Q9UNF1 606 aaPredicted RBP14.37□□□□□ -0.11
VPS33B-208ENST00000574755 PHF24Q9UPV7 400 aa14.37□□□□□ -0.11
VPS33B-208ENST00000574755 MRPL42Q9Y6G3 142 aaKnown RBP14.37□□□□□ -0.11
VPS33B-208ENST00000574755 PLXNA3P51805 1871 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 ENPP3O14638 875 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 ERVK-10P10266 1014 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 BGNP21810 368 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 CCNCP24863 283 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 ALDH3A1P30838 453 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 HOXC13P31276 330 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 ARPP19P56211 112 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 OVGP1Q12889 678 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 NAB1Q13506 487 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 PRPSAP1Q14558 356 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 SETDB1Q15047 1291 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 MANEALQ5VSG8 457 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 ZNF280DQ6N043 979 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 LZTR1Q8N653 840 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 TTC9BQ8N6N2 239 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 ATAD1Q8NBU5 361 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 ARMC2Q8NEN0 867 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 GPR152Q8TDT2 470 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 DPF3Q92784 378 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 ZNF669Q96BR6 464 aaPredicted RBP14.36□□□□□ -0.11
VPS33B-208ENST00000574755 APOL2Q9BQE5 337 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 GPR62Q9BZJ7 368 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 ELAC1Q9H777 363 aaKnown RBP14.36□□□□□ -0.11
VPS33B-208ENST00000574755 E9PAM4 449 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 ATP9BO43861 1147 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 CCNB1P14635 433 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 GATMP50440 423 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 TUBP50607 506 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 USP46P62068 366 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 CCDC15Q0P6D6 951 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 BNIP1Q12981 228 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 PLEKHG4Q58EX7 1191 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 ARHGAP12Q8IWW6 846 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 ZSCAN18Q8TBC5 510 aaPredicted RBP14.36□□□□□ -0.11
VPS33B-208ENST00000574755 C10orf82Q8WW14 230 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 LRRC37BQ96QE4 947 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 ECT2Q9H8V3 914 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 NDFIP2Q9NV92 336 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 LRFN2Q9ULH4 789 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 TLR6Q9Y2C9 796 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 PSAT1Q9Y617 370 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 HS3ST4Q9Y661 456 aa14.36□□□□□ -0.11
VPS33B-208ENST00000574755 KCNU1A8MYU2 1149 aa14.35□□□□□ -0.11
VPS33B-208ENST00000574755 ALDH2P05091 517 aa14.35□□□□□ -0.11
VPS33B-208ENST00000574755 CPB1P15086 417 aa14.35□□□□□ -0.11
VPS33B-208ENST00000574755 CRHR1P34998 444 aa14.35□□□□□ -0.11
VPS33B-208ENST00000574755 TIFABQ6ZNK6 161 aa14.35□□□□□ -0.11
VPS33B-208ENST00000574755 OTOP3Q7RTS5 596 aa14.35□□□□□ -0.11
VPS33B-208ENST00000574755 FAM126BQ8IXS8 530 aa14.35□□□□□ -0.11
VPS33B-208ENST00000574755 ARHGAP18Q8N392 663 aa14.35□□□□□ -0.11
VPS33B-208ENST00000574755 CNTD1Q8N815 330 aa14.35□□□□□ -0.11
VPS33B-208ENST00000574755 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.35□□□□□ -0.11
VPS33B-208ENST00000574755 FCRL3Q96P31 734 aaPredicted RBP14.35□□□□□ -0.11
VPS33B-208ENST00000574755 CASD1Q96PB1 797 aa14.35□□□□□ -0.11
VPS33B-208ENST00000574755 TSGA13Q96PP4 275 aa14.35□□□□□ -0.11
VPS33B-208ENST00000574755 MECRQ9BV79 373 aa14.35□□□□□ -0.11
VPS33B-208ENST00000574755 SLC39A8Q9C0K1 460 aa14.35□□□□□ -0.11
VPS33B-208ENST00000574755 MPP6Q9NZW5 540 aa14.35□□□□□ -0.11
VPS33B-208ENST00000574755 GMIPQ9P107 970 aa14.35□□□□□ -0.11
VPS33B-208ENST00000574755 DCTN3O75935 186 aa14.34□□□□□ -0.11
VPS33B-208ENST00000574755 ITGA2BP08514 1039 aa14.34□□□□□ -0.11
VPS33B-208ENST00000574755 MAGEA11P43364 429 aa14.34□□□□□ -0.11
VPS33B-208ENST00000574755 GPNMBQ14956 572 aa14.34□□□□□ -0.11
VPS33B-208ENST00000574755 CERCAMQ5T4B2 595 aa14.34□□□□□ -0.11
VPS33B-208ENST00000574755 NAPEPLDQ6IQ20 393 aa14.34□□□□□ -0.11
VPS33B-208ENST00000574755 TMEM135Q86UB9 458 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms