RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 PRMT1Q99873 361 aaKnown RBP21.76■■□□□ 1.07
VPS53-216ENST00000574029 THAP9Q9H5L6 903 aa21.76■■□□□ 1.07
VPS53-216ENST00000574029 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.76■■□□□ 1.07
VPS53-216ENST00000574029 TPX2Q9ULW0 747 aaKnown RBP21.76■■□□□ 1.07
VPS53-216ENST00000574029 KCNU1A8MYU2 1149 aa21.75■■□□□ 1.07
VPS53-216ENST00000574029 WNT9AO14904 365 aa21.75■■□□□ 1.07
VPS53-216ENST00000574029 LETM1O95202 739 aaPredicted RBP21.75■■□□□ 1.07
VPS53-216ENST00000574029 STK19P49842 368 aaPredicted RBP21.75■■□□□ 1.07
VPS53-216ENST00000574029 ADPRHP54922 357 aa21.75■■□□□ 1.07
VPS53-216ENST00000574029 PITX1P78337 314 aaPredicted RBP21.75■■□□□ 1.07
VPS53-216ENST00000574029 CYP4F3Q08477 520 aa21.75■■□□□ 1.07
VPS53-216ENST00000574029 MORC3Q14149 939 aa21.75■■□□□ 1.07
VPS53-216ENST00000574029 ELAVL3Q14576 367 aaKnown RBP21.75■■□□□ 1.07
VPS53-216ENST00000574029 DHRS13Q6UX07 377 aa21.75■■□□□ 1.07
VPS53-216ENST00000574029 GATAD2AQ86YP4 633 aa21.75■■□□□ 1.07
VPS53-216ENST00000574029 PDCD7Q8N8D1 485 aaKnown RBP21.75■■□□□ 1.07
VPS53-216ENST00000574029 ATP6V0D2Q8N8Y2 350 aa21.75■■□□□ 1.07
VPS53-216ENST00000574029 SAP25Q8TEE9 199 aa21.75■■□□□ 1.07
VPS53-216ENST00000574029 UBE2TQ9NPD8 197 aaPredicted RBP21.75■■□□□ 1.07
VPS53-216ENST00000574029 AASDHPPTQ9NRN7 309 aa21.75■■□□□ 1.07
VPS53-216ENST00000574029 CTNND2Q9UQB3 1225 aa21.75■■□□□ 1.07
VPS53-216ENST00000574029 PCDHGA1Q9Y5H4 931 aa21.75■■□□□ 1.07
VPS53-216ENST00000574029 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.75■■□□□ 1.07
VPS53-216ENST00000574029 E9PAM4 449 aa21.74■■□□□ 1.07
VPS53-216ENST00000574029 F5H5T6 163 aa21.74■■□□□ 1.07
VPS53-216ENST00000574029 MZF1P28698 734 aaPredicted RBP21.74■■□□□ 1.07
VPS53-216ENST00000574029 NNMTP40261 264 aa21.74■■□□□ 1.07
VPS53-216ENST00000574029 PLK1P53350 603 aa21.74■■□□□ 1.07
VPS53-216ENST00000574029 CCDC157Q569K6 752 aa21.74■■□□□ 1.07
VPS53-216ENST00000574029 TMPRSS12Q86WS5 348 aa21.74■■□□□ 1.07
VPS53-216ENST00000574029 CCAR2Q8N163 923 aaKnown RBP21.74■■□□□ 1.07
VPS53-216ENST00000574029 OR14C36Q8NHC7 312 aa21.74■■□□□ 1.07
VPS53-216ENST00000574029 HNRNPLLQ8WVV9 542 aaKnown RBP21.74■■□□□ 1.07
VPS53-216ENST00000574029 FAM131CQ96AQ9 280 aa21.74■■□□□ 1.07
VPS53-216ENST00000574029 NBEAQ8NFP9 2946 aa21.73■■□□□ 1.07
VPS53-216ENST00000574029 ITPR1Q14643 2758 aa21.73■■□□□ 1.07
VPS53-216ENST00000574029 ENC1O14682 589 aa21.73■■□□□ 1.07
VPS53-216ENST00000574029 YKT6O15498 198 aa21.73■■□□□ 1.07
VPS53-216ENST00000574029 LATO43561 262 aa21.73■■□□□ 1.07
VPS53-216ENST00000574029 IL1BP01584 269 aa21.73■■□□□ 1.07
VPS53-216ENST00000574029 ITGAVP06756 1048 aa21.73■■□□□ 1.07
VPS53-216ENST00000574029 GNA15P30679 374 aa21.73■■□□□ 1.07
VPS53-216ENST00000574029 DRD3P35462 400 aa21.73■■□□□ 1.07
VPS53-216ENST00000574029 VASPP50552 380 aaPredicted RBP21.73■■□□□ 1.07
VPS53-216ENST00000574029 SULT2A1Q06520 285 aa21.73■■□□□ 1.07
VPS53-216ENST00000574029 PDCLQ13371 301 aa21.73■■□□□ 1.07
VPS53-216ENST00000574029 TAF5Q15542 800 aa21.73■■□□□ 1.07
VPS53-216ENST00000574029 SOWAHCQ53LP3 525 aaPredicted RBP21.73■■□□□ 1.07
VPS53-216ENST00000574029 TTC39BQ5VTQ0 682 aaPredicted RBP21.73■■□□□ 1.07
VPS53-216ENST00000574029 ENOSF1Q7L5Y1 443 aa21.73■■□□□ 1.07
VPS53-216ENST00000574029 FRS2Q8WU20 508 aa21.73■■□□□ 1.07
VPS53-216ENST00000574029 SERAC1Q96JX3 654 aa21.73■■□□□ 1.07
VPS53-216ENST00000574029 ACP6Q9NPH0 428 aa21.73■■□□□ 1.07
VPS53-216ENST00000574029 GDF3Q9NR23 364 aa21.73■■□□□ 1.07
VPS53-216ENST00000574029 SLC12A6Q9UHW9 1150 aa21.73■■□□□ 1.07
VPS53-216ENST00000574029 THAP12O43422 761 aa21.72■■□□□ 1.07
VPS53-216ENST00000574029 SLC2A3P11169 496 aa21.72■■□□□ 1.07
VPS53-216ENST00000574029 VAV1P15498 845 aa21.72■■□□□ 1.07
VPS53-216ENST00000574029 PDGFRAP16234 1089 aa21.72■■□□□ 1.07
VPS53-216ENST00000574029 ABCB4P21439 1286 aa21.72■■□□□ 1.07
VPS53-216ENST00000574029 STX17P56962 302 aa21.72■■□□□ 1.07
VPS53-216ENST00000574029 NXPH1P58417 271 aa21.72■■□□□ 1.07
VPS53-216ENST00000574029 PAK1Q13153 545 aa21.72■■□□□ 1.07
VPS53-216ENST00000574029 CXorf57Q6NSI4 855 aaKnown RBP21.72■■□□□ 1.07
VPS53-216ENST00000574029 CIR1Q86X95 450 aaPredicted RBP21.72■■□□□ 1.07
VPS53-216ENST00000574029 CNDP2Q96KP4 475 aaKnown RBP21.72■■□□□ 1.07
VPS53-216ENST00000574029 SPAG5Q96R06 1193 aa21.72■■□□□ 1.07
VPS53-216ENST00000574029 SRRTQ9BXP5 876 aaKnown RBP21.72■■□□□ 1.07
VPS53-216ENST00000574029 ERVMER34-1Q9H9K5 563 aa21.72■■□□□ 1.07
VPS53-216ENST00000574029 LAMA5O15230 3695 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 TBC1D3DA0A087WVF3 549 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 TBC1D3IA0A087WXS9 549 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 TBC1D3EA0A087X179 549 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 TBC1D3KA0A087X1G2 549 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 A0A1B0GVM2 712 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 TBC1D3FA6NER0 549 aaPredicted RBP21.71■■□□□ 1.07
VPS53-216ENST00000574029 TCAF2A6NFQ2 919 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 TBC1D3LB9A6J9 549 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 TLR4O00206 839 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 LDOC1O95751 146 aaPredicted RBP21.71■■□□□ 1.07
VPS53-216ENST00000574029 GLI1P08151 1106 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 C1SP09871 688 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 TBC1D3HP0C7X1 549 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 CDK4P11802 303 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 EPHA8P29322 1005 aaPredicted RBP21.71■■□□□ 1.07
VPS53-216ENST00000574029 OXCT1P55809 520 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 PPP2CBP62714 309 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 PPP2CAP67775 309 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 SLC45A4Q5BKX6 768 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 RABGAP1LQ5R372 815 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 TBC1D3GQ6DHY5 549 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 TBC1D3CQ6IPX1 549 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP21.71■■□□□ 1.07
VPS53-216ENST00000574029 TBC1D3Q8IZP1 549 aaPredicted RBP21.71■■□□□ 1.07
VPS53-216ENST00000574029 WDTC1Q8N5D0 677 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 ALG14Q96F25 216 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 SLC2A13Q96QE2 648 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 KDM4CQ9H3R0 1056 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 FAM204AQ9H8W3 233 aa21.71■■□□□ 1.07
VPS53-216ENST00000574029 ASNSD1Q9NWL6 643 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms