RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 TOP3AQ13472 1001 aaPredicted RBP6.49□□□□□ -1.37
VPS53-212ENST00000572259 ITGA7Q13683 1181 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 MAN2A1Q16706 1144 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 TSTQ16762 297 aaKnown RBP6.49□□□□□ -1.37
VPS53-212ENST00000572259 THEMIS2Q5TEJ8 643 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 KLHDC7AQ5VTJ3 777 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 USP17L6PQ6QN14 398 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 CCDC91Q7Z6B0 441 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 TXLNBQ8N3L3 684 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 PPM1NQ8N819 430 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 NAT8LQ8N9F0 302 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 AVL9Q8NBF6 648 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 TXNDC5Q8NBS9 432 aaKnown RBP6.49□□□□□ -1.37
VPS53-212ENST00000572259 FAM71BQ8TC56 605 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 STT3BQ8TCJ2 826 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 ADAMTS17Q8TE56 1095 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 WASF1Q92558 559 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 RGMAQ96B86 450 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 C18orf8Q96DM3 657 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 TRIM44Q96DX7 344 aaPredicted RBP6.49□□□□□ -1.37
VPS53-212ENST00000572259 PPP1R9BQ96SB3 815 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 HEPHQ9BQS7 1158 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 DESI2Q9BSY9 194 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 MTG1Q9BT17 334 aaPredicted RBP6.49□□□□□ -1.37
VPS53-212ENST00000572259 PI4K2AQ9BTU6 479 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 EIF2AQ9BY44 585 aaKnown RBP6.49□□□□□ -1.37
VPS53-212ENST00000572259 ZMAT3Q9HA38 289 aaKnown RBP6.49□□□□□ -1.37
VPS53-212ENST00000572259 SAYSD1Q9NPB0 183 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 COL20A1Q9P218 1284 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 MYO1AQ9UBC5 1043 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 DNAI1Q9UI46 699 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 RASAL2Q9UJF2 1139 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 ZMYND8Q9ULU4 1186 aaPredicted RBP6.49□□□□□ -1.37
VPS53-212ENST00000572259 PCDHA6Q9UN73 950 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 RRP15Q9Y3B9 282 aaKnown RBP6.49□□□□□ -1.37
VPS53-212ENST00000572259 NID2Q14112 1375 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 A0A1W2PPC1 479 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 ESYT2A0FGR8 921 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 CCDC154A6NI56 674 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 H0Y626 953 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 SLC16A6O15403 523 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 ARHGAP6O43182 974 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 HTRA2O43464 458 aaPredicted RBP6.48□□□□□ -1.37
VPS53-212ENST00000572259 PTP4A3O75365 173 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 DEXIO95424 95 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 MT-ND3P03897 115 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 CLTBP09497 229 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 ICAM3P32942 547 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 HNF4AP41235 474 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 ETV4P43268 484 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 STAT5BP51692 787 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 HSD17B7P56937 341 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 SESN2P58004 480 aaPredicted RBP6.48□□□□□ -1.37
VPS53-212ENST00000572259 NLRP5P59047 1200 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 ADAM15Q13444 863 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 TOB2Q14106 344 aaPredicted RBP6.48□□□□□ -1.37
VPS53-212ENST00000572259 FGL2Q14314 439 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 EIF4HQ15056 248 aaKnown RBP6.48□□□□□ -1.37
VPS53-212ENST00000572259 CNGA2Q16280 664 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 LY6KQ17RY6 165 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 MUM1Q2TAK8 710 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 TRIM60Q495X7 471 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 C5orf22Q49AR2 442 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 KRTCAP3Q53RY4 240 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 FAM26FQ5R3K3 315 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 GALNT17Q6IS24 598 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 ACAD10Q6JQN1 1059 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 NFRKBQ6P4R8 1299 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 CXCL17Q6UXB2 119 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 ANKRD33Q7Z3H0 272 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 PRPF39Q86UA1 669 aaKnown RBP6.48□□□□□ -1.37
VPS53-212ENST00000572259 HERC6Q8IVU3 1022 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 REXO1L1PQ8IX06 675 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 IL31RAQ8NI17 732 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 PPTC7Q8NI37 304 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 CREB3L4Q8TEY5 395 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 ST8SIA4Q92187 359 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 TNPO1Q92973 898 aaKnown RBP6.48□□□□□ -1.37
VPS53-212ENST00000572259 MTFMTQ96DP5 389 aaKnown RBP6.48□□□□□ -1.37
VPS53-212ENST00000572259 ZNF845Q96IR2 970 aaPredicted RBP6.48□□□□□ -1.37
VPS53-212ENST00000572259 LCORQ96JN0 433 aaPredicted RBP6.48□□□□□ -1.37
VPS53-212ENST00000572259 WDR92Q96MX6 357 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 YME1L1Q96TA2 773 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 PAIP1Q9H074 479 aaKnown RBP6.48□□□□□ -1.37
VPS53-212ENST00000572259 PRDM12Q9H4Q4 367 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 TMEM160Q9NX00 188 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 BLOC1S6Q9UL45 172 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 MTF2Q9Y483 593 aaPredicted RBP6.48□□□□□ -1.37
VPS53-212ENST00000572259 CFAP20Q9Y6A4 193 aaKnown RBP6.48□□□□□ -1.37
VPS53-212ENST00000572259 CDY2AQ9Y6F7 541 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 SCN10AQ9Y5Y9 1956 aa6.48□□□□□ -1.37
VPS53-212ENST00000572259 A0A0B4J269 797 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 MYADML2A6NDP7 307 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 C9orf118A6NHY6 69 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 F8W8V4 182 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 ADCY6O43306 1168 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 PFKFB2O60825 505 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 FAM155BO75949 473 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 TGDSO95455 350 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 GGPS1O95749 300 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms