RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 SRSF6Q13247 344 aaKnown RBP18.72■□□□□ 0.59
CLK3-227ENST00000570296 ELAVL3Q14576 367 aaKnown RBP18.72■□□□□ 0.59
CLK3-227ENST00000570296 CLCA4Q14CN2 919 aa18.72■□□□□ 0.59
CLK3-227ENST00000570296 TGIF1Q15583 401 aa18.72■□□□□ 0.59
CLK3-227ENST00000570296 GUSBP11Q6P575 273 aa18.72■□□□□ 0.59
CLK3-227ENST00000570296 PTRH1Q86Y79 214 aaKnown RBP18.72■□□□□ 0.59
CLK3-227ENST00000570296 STK40Q8N2I9 435 aa18.72■□□□□ 0.59
CLK3-227ENST00000570296 FIBINQ8TAL6 211 aa18.72■□□□□ 0.59
CLK3-227ENST00000570296 FUCA2Q9BTY2 467 aa18.72■□□□□ 0.59
CLK3-227ENST00000570296 AGPAT3Q9NRZ7 376 aa18.72■□□□□ 0.59
CLK3-227ENST00000570296 SEPT10Q9P0V9 454 aa18.72■□□□□ 0.59
CLK3-227ENST00000570296 PLEKHB1Q9UF11 243 aaPredicted RBP18.72■□□□□ 0.59
CLK3-227ENST00000570296 ANAPC2Q9UJX6 822 aa18.72■□□□□ 0.59
CLK3-227ENST00000570296 ERVW-1Q9UQF0 538 aa18.72■□□□□ 0.59
CLK3-227ENST00000570296 LRRK1Q38SD2 2015 aa18.71■□□□□ 0.59
CLK3-227ENST00000570296 EME2A4GXA9 379 aaPredicted RBP18.71■□□□□ 0.59
CLK3-227ENST00000570296 PLD2O14939 933 aa18.71■□□□□ 0.59
CLK3-227ENST00000570296 TBL1XO60907 577 aa18.71■□□□□ 0.59
CLK3-227ENST00000570296 RTN2O75298 545 aa18.71■□□□□ 0.59
CLK3-227ENST00000570296 KIF20AO95235 890 aa18.71■□□□□ 0.59
CLK3-227ENST00000570296 CYP2J2P51589 502 aa18.71■□□□□ 0.59
CLK3-227ENST00000570296 PDX1P52945 283 aa18.71■□□□□ 0.59
CLK3-227ENST00000570296 HNRNPKP61978 463 aaKnown RBP eCLIP18.71■□□□□ 0.59
CLK3-227ENST00000570296 EIF3IQ13347 325 aaKnown RBP18.71■□□□□ 0.59
CLK3-227ENST00000570296 NCAPHQ15003 741 aa18.71■□□□□ 0.59
CLK3-227ENST00000570296 POM121L1PQ3SYA9 428 aa18.71■□□□□ 0.59
CLK3-227ENST00000570296 RRAGBQ5VZM2 374 aa18.71■□□□□ 0.59
CLK3-227ENST00000570296 HIST2H2BCQ6DN03 193 aa18.71■□□□□ 0.59
CLK3-227ENST00000570296 MFN1Q8IWA4 741 aa18.71■□□□□ 0.59
CLK3-227ENST00000570296 INTS6Q9UL03 887 aaKnown RBP18.71■□□□□ 0.59
CLK3-227ENST00000570296 SRPK3Q9UPE1 567 aa18.71■□□□□ 0.59
CLK3-227ENST00000570296 ZFC3H1O60293 1989 aaKnown RBP18.7■□□□□ 0.58
CLK3-227ENST00000570296 SCN8AQ9UQD0 1980 aa18.7■□□□□ 0.58
CLK3-227ENST00000570296 EIF3DO15371 548 aaKnown RBP eCLIP18.7■□□□□ 0.58
CLK3-227ENST00000570296 IRAK2O43187 625 aa18.7■□□□□ 0.58
CLK3-227ENST00000570296 SNRPFP62306 86 aaKnown RBP18.7■□□□□ 0.58
CLK3-227ENST00000570296 INCA1Q0VD86 236 aa18.7■□□□□ 0.58
CLK3-227ENST00000570296 MANEAQ5SRI9 462 aa18.7■□□□□ 0.58
CLK3-227ENST00000570296 PIK3R6Q5UE93 754 aa18.7■□□□□ 0.58
CLK3-227ENST00000570296 DSG4Q86SJ6 1040 aa18.7■□□□□ 0.58
CLK3-227ENST00000570296 CCDC65Q8IXS2 484 aa18.7■□□□□ 0.58
CLK3-227ENST00000570296 ELMO3Q96BJ8 720 aa18.7■□□□□ 0.58
CLK3-227ENST00000570296 TWNKQ96RR1 684 aa18.7■□□□□ 0.58
CLK3-227ENST00000570296 CALN1Q9BXU9 219 aa18.7■□□□□ 0.58
CLK3-227ENST00000570296 ITPR3Q14573 2671 aa18.69■□□□□ 0.58
CLK3-227ENST00000570296 TGFB1I1O43294 461 aa18.69■□□□□ 0.58
CLK3-227ENST00000570296 NEBLO76041 1014 aa18.69■□□□□ 0.58
CLK3-227ENST00000570296 VNN1O95497 513 aa18.69■□□□□ 0.58
CLK3-227ENST00000570296 ASPAP45381 313 aa18.69■□□□□ 0.58
CLK3-227ENST00000570296 SGSM1Q2NKQ1 1148 aa18.69■□□□□ 0.58
CLK3-227ENST00000570296 JAMLQ86YT9 394 aa18.69■□□□□ 0.58
CLK3-227ENST00000570296 FBXO39Q8N4B4 442 aa18.69■□□□□ 0.58
CLK3-227ENST00000570296 OR13H1Q8NG92 308 aa18.69■□□□□ 0.58
CLK3-227ENST00000570296 TAF4BQ92750 862 aa18.69■□□□□ 0.58
CLK3-227ENST00000570296 PTPRN2Q92932 1015 aa18.69■□□□□ 0.58
CLK3-227ENST00000570296 NT5C1AQ9BXI3 368 aa18.69■□□□□ 0.58
CLK3-227ENST00000570296 UBXN6Q9BZV1 441 aa18.69■□□□□ 0.58
CLK3-227ENST00000570296 PREBQ9HCU5 417 aa18.69■□□□□ 0.58
CLK3-227ENST00000570296 SALL4Q9UJQ4 1053 aa18.69■□□□□ 0.58
CLK3-227ENST00000570296 TUBD1Q9UJT1 453 aa18.69■□□□□ 0.58
CLK3-227ENST00000570296 CSNK1G3Q9Y6M4 447 aa18.69■□□□□ 0.58
CLK3-227ENST00000570296 POLQO75417 2590 aa18.69■□□□□ 0.58
CLK3-227ENST00000570296 C4BPAP04003 597 aaKnown RBP18.68■□□□□ 0.58
CLK3-227ENST00000570296 RPN1P04843 607 aaKnown RBP18.68■□□□□ 0.58
CLK3-227ENST00000570296 CASP4P49662 377 aa18.68■□□□□ 0.58
CLK3-227ENST00000570296 CLDN10P78369 228 aa18.68■□□□□ 0.58
CLK3-227ENST00000570296 ECT2LQ008S8 904 aa18.68■□□□□ 0.58
CLK3-227ENST00000570296 SPIDRQ14159 915 aa18.68■□□□□ 0.58
CLK3-227ENST00000570296 NR0B2Q15466 257 aa18.68■□□□□ 0.58
CLK3-227ENST00000570296 RAB41Q5JT25 222 aa18.68■□□□□ 0.58
CLK3-227ENST00000570296 AGBL4Q5VU57 503 aa18.68■□□□□ 0.58
CLK3-227ENST00000570296 RFWD3Q6PCD5 774 aa18.68■□□□□ 0.58
CLK3-227ENST00000570296 DCP2Q8IU60 420 aaKnown RBP18.68■□□□□ 0.58
CLK3-227ENST00000570296 HJURPQ8NCD3 748 aaPredicted RBP18.68■□□□□ 0.58
CLK3-227ENST00000570296 ZNF548Q8NEK5 533 aaPredicted RBP18.68■□□□□ 0.58
CLK3-227ENST00000570296 FAM174AQ8TBP5 190 aa18.68■□□□□ 0.58
CLK3-227ENST00000570296 HTR3CQ8WXA8 447 aa18.68■□□□□ 0.58
CLK3-227ENST00000570296 SPAG5Q96R06 1193 aa18.68■□□□□ 0.58
CLK3-227ENST00000570296 DNAJC28Q9NX36 388 aa18.68■□□□□ 0.58
CLK3-227ENST00000570296 SLCO3A1Q9UIG8 710 aa18.68■□□□□ 0.58
CLK3-227ENST00000570296 CELSR2Q9HCU4 2923 aa18.67■□□□□ 0.58
CLK3-227ENST00000570296 CLIC2O15247 247 aa18.67■□□□□ 0.58
CLK3-227ENST00000570296 NVLO15381 856 aaKnown RBP18.67■□□□□ 0.58
CLK3-227ENST00000570296 UGT1A5P35504 534 aa18.67■□□□□ 0.58
CLK3-227ENST00000570296 CTSOP43234 321 aaPredicted RBP18.67■□□□□ 0.58
CLK3-227ENST00000570296 METAP1P53582 386 aa18.67■□□□□ 0.58
CLK3-227ENST00000570296 PITRM1Q5JRX3 1037 aa18.67■□□□□ 0.58
CLK3-227ENST00000570296 FAM46CQ5VWP2 391 aa18.67■□□□□ 0.58
CLK3-227ENST00000570296 RNF219Q5W0B1 726 aaPredicted RBP18.67■□□□□ 0.58
CLK3-227ENST00000570296 PM20D1Q6GTS8 502 aa18.67■□□□□ 0.58
CLK3-227ENST00000570296 CRTC1Q6UUV9 634 aa18.67■□□□□ 0.58
CLK3-227ENST00000570296 RAB11FIP2Q7L804 512 aa18.67■□□□□ 0.58
CLK3-227ENST00000570296 SLC22A18ASQ8N1D0 253 aa18.67■□□□□ 0.58
CLK3-227ENST00000570296 ZNF507Q8TCN5 953 aa18.67■□□□□ 0.58
CLK3-227ENST00000570296 NAT6Q93015 286 aa18.67■□□□□ 0.58
CLK3-227ENST00000570296 DNAI2Q9GZS0 605 aa18.67■□□□□ 0.58
CLK3-227ENST00000570296 CAAP1Q9H8G2 361 aa18.67■□□□□ 0.58
CLK3-227ENST00000570296 TMX2-CTNND1H3BSU7 103 aa18.66■□□□□ 0.58
CLK3-227ENST00000570296 SLC31A1O15431 190 aa18.66■□□□□ 0.58
CLK3-227ENST00000570296 MOCS3O95396 460 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms