RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 BMP1P13497 986 aa17.03■□□□□ 0.32
VPS4A-202ENST00000562754 ZFXP17010 805 aaPredicted RBP17.03■□□□□ 0.32
VPS4A-202ENST00000562754 TGM2P21980 687 aa17.03■□□□□ 0.32
VPS4A-202ENST00000562754 OR1E1P30953 314 aa17.03■□□□□ 0.32
VPS4A-202ENST00000562754 ZNF177Q13360 481 aaPredicted RBP17.03■□□□□ 0.32
VPS4A-202ENST00000562754 CDH18Q13634 790 aa17.03■□□□□ 0.32
VPS4A-202ENST00000562754 LONRF2Q1L5Z9 754 aa17.03■□□□□ 0.32
VPS4A-202ENST00000562754 ITPRIPL2Q3MIP1 535 aa17.03■□□□□ 0.32
VPS4A-202ENST00000562754 NAIF1Q69YI7 327 aaPredicted RBP17.03■□□□□ 0.32
VPS4A-202ENST00000562754 C1orf228Q6PIY5 440 aa17.03■□□□□ 0.32
VPS4A-202ENST00000562754 ETFBKMTQ8IXQ9 262 aa17.03■□□□□ 0.32
VPS4A-202ENST00000562754 UMODL1-AS1Q8N2C9 162 aa17.03■□□□□ 0.32
VPS4A-202ENST00000562754 CCDC33Q8N5R6 958 aa17.03■□□□□ 0.32
VPS4A-202ENST00000562754 LMLNQ96KR4 655 aa17.03■□□□□ 0.32
VPS4A-202ENST00000562754 ASB2Q96Q27 587 aa17.03■□□□□ 0.32
VPS4A-202ENST00000562754 LRRC19Q9H756 370 aa17.03■□□□□ 0.32
VPS4A-202ENST00000562754 DTLQ9NZJ0 730 aa17.03■□□□□ 0.32
VPS4A-202ENST00000562754 CDC23Q9UJX2 597 aa17.03■□□□□ 0.32
VPS4A-202ENST00000562754 H0Y626 953 aa17.02■□□□□ 0.32
VPS4A-202ENST00000562754 APOC4-APOC2K7ER74 178 aa17.02■□□□□ 0.32
VPS4A-202ENST00000562754 APOC2P02655 101 aa17.02■□□□□ 0.32
VPS4A-202ENST00000562754 RHOCP08134 193 aa17.02■□□□□ 0.32
VPS4A-202ENST00000562754 GJA4P35212 333 aa17.02■□□□□ 0.32
VPS4A-202ENST00000562754 SERPINB6P35237 376 aa17.02■□□□□ 0.32
VPS4A-202ENST00000562754 LMAN2Q12907 356 aa17.02■□□□□ 0.32
VPS4A-202ENST00000562754 SETD3Q86TU7 594 aaPredicted RBP17.02■□□□□ 0.32
VPS4A-202ENST00000562754 NAT16Q8N8M0 369 aa17.02■□□□□ 0.32
VPS4A-202ENST00000562754 FIBINQ8TAL6 211 aa17.02■□□□□ 0.32
VPS4A-202ENST00000562754 ACTL9Q8TC94 416 aa17.02■□□□□ 0.32
VPS4A-202ENST00000562754 OLFM3Q96PB7 478 aa17.02■□□□□ 0.32
VPS4A-202ENST00000562754 FAM118BQ9BPY3 351 aa17.02■□□□□ 0.32
VPS4A-202ENST00000562754 SLC39A8Q9C0K1 460 aa17.02■□□□□ 0.32
VPS4A-202ENST00000562754 FBXO10Q9UK96 956 aa17.02■□□□□ 0.32
VPS4A-202ENST00000562754 HEY1Q9Y5J3 304 aa17.02■□□□□ 0.32
VPS4A-202ENST00000562754 MRFAP1Q9Y605 127 aa17.02■□□□□ 0.32
VPS4A-202ENST00000562754 SHROOM3Q8TF72 1996 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 A0A0D9SEW6 157 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 RASA4BC9J798 803 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 TRIM24O15164 1050 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 RASA4O43374 803 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 RAMP2O60895 175 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 MZF1P28698 734 aaPredicted RBP17.01■□□□□ 0.31
VPS4A-202ENST00000562754 HLA-FP30511 346 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 CD70P32970 193 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 ACVRL1P37023 503 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 OPRD1P41143 372 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 CSKP41240 450 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 SLC6A11P48066 632 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 SOX9P48436 509 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 NUMBP49757 651 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 NDST2P52849 883 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 OTUD4Q01804 1114 aaKnown RBP17.01■□□□□ 0.31
VPS4A-202ENST00000562754 GNA12Q03113 381 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 MESP2Q0VG99 397 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 NR1H3Q13133 447 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 TDGQ13569 410 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 NOMO1Q15155 1222 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 C6orf118Q5T5N4 469 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 CCDC181Q5TID7 509 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 RNF219Q5W0B1 726 aaPredicted RBP17.01■□□□□ 0.31
VPS4A-202ENST00000562754 LZTR1Q8N653 840 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 OR7D4Q8NG98 312 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 ATG4AQ8WYN0 398 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 DNASE1L2Q92874 299 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 ALG14Q96F25 216 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 HMCESQ96FZ2 354 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 TRPV5Q9NQA5 729 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 DNAJC17Q9NVM6 304 aaKnown RBP17.01■□□□□ 0.31
VPS4A-202ENST00000562754 OR51B4Q9Y5P0 310 aa17.01■□□□□ 0.31
VPS4A-202ENST00000562754 ILVBLA1L0T0 632 aa17■□□□□ 0.31
VPS4A-202ENST00000562754 TULP3O75386 442 aa17■□□□□ 0.31
VPS4A-202ENST00000562754 CISD3P0C7P0 127 aa17■□□□□ 0.31
VPS4A-202ENST00000562754 GALNT2Q10471 571 aa17■□□□□ 0.31
VPS4A-202ENST00000562754 IER5LQ5T953 404 aa17■□□□□ 0.31
VPS4A-202ENST00000562754 ARHGAP36Q6ZRI8 547 aa17■□□□□ 0.31
VPS4A-202ENST00000562754 PHTF2Q8N3S3 785 aa17■□□□□ 0.31
VPS4A-202ENST00000562754 DDX51Q8N8A6 666 aaKnown RBP eCLIP17■□□□□ 0.31
VPS4A-202ENST00000562754 PRELID2Q8N945 189 aa17■□□□□ 0.31
VPS4A-202ENST00000562754 CSGALNACT1Q8TDX6 532 aa17■□□□□ 0.31
VPS4A-202ENST00000562754 LRRN4Q8WUT4 740 aa17■□□□□ 0.31
VPS4A-202ENST00000562754 P3H4Q92791 437 aa17■□□□□ 0.31
VPS4A-202ENST00000562754 ARHGEF2Q92974 986 aaKnown RBP17■□□□□ 0.31
VPS4A-202ENST00000562754 AP1M1Q9BXS5 423 aa17■□□□□ 0.31
VPS4A-202ENST00000562754 SLC2A11Q9BYW1 496 aa17■□□□□ 0.31
VPS4A-202ENST00000562754 SLC2A4RGQ9NR83 387 aa17■□□□□ 0.31
VPS4A-202ENST00000562754 ABCB8Q9NUT2 735 aa17■□□□□ 0.31
VPS4A-202ENST00000562754 DONSONQ9NYP3 566 aa17■□□□□ 0.31
VPS4A-202ENST00000562754 INTS6Q9UL03 887 aaKnown RBP17■□□□□ 0.31
VPS4A-202ENST00000562754 COL6A3P12111 3177 aa16.99■□□□□ 0.31
VPS4A-202ENST00000562754 DFFAO00273 331 aa16.99■□□□□ 0.31
VPS4A-202ENST00000562754 SRFP11831 508 aa16.99■□□□□ 0.31
VPS4A-202ENST00000562754 PABPC1P11940 636 aaKnown RBP16.99■□□□□ 0.31
VPS4A-202ENST00000562754 NR2C2P49116 596 aa16.99■□□□□ 0.31
VPS4A-202ENST00000562754 YBEYP58557 167 aaPredicted RBP16.99■□□□□ 0.31
VPS4A-202ENST00000562754 KDSRQ06136 332 aa16.99■□□□□ 0.31
VPS4A-202ENST00000562754 POLD3Q15054 466 aaPredicted RBP16.99■□□□□ 0.31
VPS4A-202ENST00000562754 WHAMMP3Q1A5X7 153 aa16.99■□□□□ 0.31
VPS4A-202ENST00000562754 PARP15Q460N3 678 aa16.99■□□□□ 0.31
VPS4A-202ENST00000562754 FUT11Q495W5 492 aa16.99■□□□□ 0.31
VPS4A-202ENST00000562754 DNTTIP2Q5QJE6 756 aaKnown RBP16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms