RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 TIGD1Q96MW7 591 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 DCBLD2Q96PD2 775 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 MED15Q96RN5 788 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 FAM129BQ96TA1 746 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 EBF2Q9HAK2 575 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 DKK4Q9UBT3 224 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.41□□□□□ -0.26
SF3B3-202ENST00000562722 FREM2Q5SZK8 3169 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 DMXL2Q8TDJ6 3036 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 PLXNB3Q9ULL4 1909 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 ITIH6Q6UXX5 1313 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 TMEM131Q92545 1883 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 CBX4O00257 560 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 PLK4O00444 970 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 BIN1O00499 593 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 YKT6O15498 198 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 PAPSS1O43252 624 aaPredicted RBP13.4□□□□□ -0.26
SF3B3-202ENST00000562722 GNA14O95837 355 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 JUPP14923 745 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 MZF1P28698 734 aaPredicted RBP13.4□□□□□ -0.26
SF3B3-202ENST00000562722 GNA15P30679 374 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 USP8P40818 1118 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 STX17P56962 302 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 YWHAZP63104 245 aaKnown RBP13.4□□□□□ -0.26
SF3B3-202ENST00000562722 SULT2A1Q06520 285 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 KCNJ12Q14500 433 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 ACCSLQ4AC99 568 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 BEND5Q7L4P6 421 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 TMPRSS12Q86WS5 348 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 EID2Q8N6I1 236 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 PTPRN2Q92932 1015 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 SLC4A5Q9BY07 1137 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 UBE2TQ9NPD8 197 aaPredicted RBP13.4□□□□□ -0.26
SF3B3-202ENST00000562722 SCUBE2Q9NQ36 999 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 ADAMTS20P59510 1910 aa13.4□□□□□ -0.26
SF3B3-202ENST00000562722 PTPRBP23467 1997 aa13.4□□□□□ -0.27
SF3B3-202ENST00000562722 ANKRD11Q6UB99 2663 aaPredicted RBP13.39□□□□□ -0.27
SF3B3-202ENST00000562722 KCNU1A8MYU2 1149 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 TLR4O00206 839 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 WNT9AO14904 365 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 RFPL3O75679 317 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 SLC2A3P11169 496 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 VAV1P15498 845 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 EPHA8P29322 1005 aaPredicted RBP13.39□□□□□ -0.27
SF3B3-202ENST00000562722 MAT2AP31153 395 aaKnown RBP13.39□□□□□ -0.27
SF3B3-202ENST00000562722 RPL34P49207 117 aaKnown RBP13.39□□□□□ -0.27
SF3B3-202ENST00000562722 CLDN6P56747 220 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 PPP2CBP62714 309 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 PPP2CAP67775 309 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 CDK17Q00537 523 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 DNAJC3Q13217 504 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 CAMK2BQ13554 666 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 SLC12A1Q13621 1099 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 POM121L1PQ3SYA9 428 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 SOWAHCQ53LP3 525 aaPredicted RBP13.39□□□□□ -0.27
SF3B3-202ENST00000562722 C6orf118Q5T5N4 469 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 DSG4Q86SJ6 1040 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 PRPF39Q86UA1 669 aaKnown RBP13.39□□□□□ -0.27
SF3B3-202ENST00000562722 CREBRFQ8IUR6 639 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 TRIM59Q8IWR1 403 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 CCAR2Q8N163 923 aaKnown RBP13.39□□□□□ -0.27
SF3B3-202ENST00000562722 SAP25Q8TEE9 199 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 STK32AQ8WU08 396 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 NXPE2Q96DL1 559 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 RPRD1AQ96P16 312 aaPredicted RBP13.39□□□□□ -0.27
SF3B3-202ENST00000562722 SPAG5Q96R06 1193 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 THAP9Q9H5L6 903 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.39□□□□□ -0.27
SF3B3-202ENST00000562722 DDIT4Q9NX09 232 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 SLC25A13Q9UJS0 675 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 TPX2Q9ULW0 747 aaKnown RBP13.39□□□□□ -0.27
SF3B3-202ENST00000562722 PCDHGA1Q9Y5H4 931 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 BAHCC1Q9P281 2608 aa13.39□□□□□ -0.27
SF3B3-202ENST00000562722 DSPP15924 2871 aaKnown RBP13.38□□□□□ -0.27
SF3B3-202ENST00000562722 PLXNA2O75051 1894 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 A0A1B0GVM2 712 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 A0A1W2PR77 199 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 TCAF2A6NFQ2 919 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 PPP1R3GB7ZBB8 358 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 BNIP3LO60238 219 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 RTN2O75298 545 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 ZNF18P17022 549 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 CCR1P32246 355 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 OXCT1P55809 520 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 NXPH1P58417 271 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 PITX1P78337 314 aaPredicted RBP13.38□□□□□ -0.27
SF3B3-202ENST00000562722 PAK1Q13153 545 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 PDCLQ13371 301 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 SHBQ15464 509 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 TAF5Q15542 800 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 MEA1Q16626 185 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 TTC39BQ5VTQ0 682 aaPredicted RBP13.38□□□□□ -0.27
SF3B3-202ENST00000562722 FAM46CQ5VWP2 391 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 NAPEPLDQ6IQ20 393 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 TMEM110Q86TL2 294 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 OXR1Q8N573 874 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 ZNF606Q8WXB4 792 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 OR8D1Q8WZ84 308 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 PPP1R9BQ96SB3 815 aa13.38□□□□□ -0.27
SF3B3-202ENST00000562722 SRRTQ9BXP5 876 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms