RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 PSMB4P28070 264 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 ACAP1Q15027 740 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 COL13A1Q5TAT6 717 aaPredicted RBP9.45□□□□□ -0.9
VPS39-205ENST00000562258 CASP10Q92851 521 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 FOPNLQ96NB1 174 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 PPP1R10Q96QC0 940 aaKnown RBP9.45□□□□□ -0.9
VPS39-205ENST00000562258 XYLT2Q9H1B5 865 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 UPF3AQ9H1J1 476 aaKnown RBP9.45□□□□□ -0.9
VPS39-205ENST00000562258 EVLQ9UI08 416 aaPredicted RBP9.45□□□□□ -0.9
VPS39-205ENST00000562258 STYXL1Q9Y6J8 313 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 PAPPAQ13219 1627 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 KCNU1A8MYU2 1149 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 RNASEH2AO75792 299 aaKnown RBP9.44□□□□□ -0.9
VPS39-205ENST00000562258 HSPA4LO95757 839 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 APODP05090 189 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 CYP1A2P05177 515 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 CHRNB2P17787 502 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 NFKB1P19838 968 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 MAT2AP31153 395 aaKnown RBP9.44□□□□□ -0.9
VPS39-205ENST00000562258 VIPR2P41587 438 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 COPS2P61201 443 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 SFSWAPQ12872 951 aaKnown RBP9.44□□□□□ -0.9
VPS39-205ENST00000562258 RCN2Q14257 317 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 PREPLQ4J6C6 727 aaPredicted RBP9.44□□□□□ -0.9
VPS39-205ENST00000562258 CHST9Q7L1S5 443 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 CMTR2Q8IYT2 770 aaKnown RBP9.44□□□□□ -0.9
VPS39-205ENST00000562258 KXD1Q9BQD3 176 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 PCDH18Q9HCL0 1135 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 ABCB8Q9NUT2 735 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 CDK5RAP2Q96SN8 1893 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 COL5A3P25940 1745 aaPredicted RBP9.44□□□□□ -0.9
VPS39-205ENST00000562258 SDR42E2A6NKP2 422 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 APOC4-APOC2K7ER74 178 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 ESRRBO95718 433 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 APOC2P02655 101 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 ITGALP20701 1170 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 LRPAP1P30533 357 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 BOP1Q14137 746 aaKnown RBP9.44□□□□□ -0.9
VPS39-205ENST00000562258 SLC29A2Q14542 456 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 MPPE1Q53F39 396 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 C9orf50Q5SZB4 431 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 FBXO36Q8NEA4 188 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 IARS2Q9NSE4 1012 aaKnown RBP9.44□□□□□ -0.9
VPS39-205ENST00000562258 GDAP2Q9NXN4 497 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 NOCTQ9UK39 431 aaKnown RBP9.44□□□□□ -0.9
VPS39-205ENST00000562258 CHKBQ9Y259 395 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 GRIN2DO15399 1336 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 TADA3O75528 432 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 SRP72O76094 671 aaKnown RBP9.44□□□□□ -0.9
VPS39-205ENST00000562258 GLI1P08151 1106 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 TAC1P20366 129 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 TIE1P35590 1138 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 FDFT1P37268 417 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 PFKPQ01813 784 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 MRNIPQ6NTE8 343 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 COLGALT2Q8IYK4 626 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 CPA6Q8N4T0 437 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 PNKPQ96T60 521 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 ELAC1Q9H777 363 aaKnown RBP9.44□□□□□ -0.9
VPS39-205ENST00000562258 XAB2Q9HCS7 855 aaKnown RBP9.44□□□□□ -0.9
VPS39-205ENST00000562258 PCMTD2Q9NV79 361 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 FAM153AQ9UHL3 310 aa9.44□□□□□ -0.9
VPS39-205ENST00000562258 AHCTF1Q8WYP5 2266 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 WDR27A2RRH5 827 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 TRIM43BA6NCK2 446 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 NCF1BA6NI72 391 aaPredicted RBP9.43□□□□□ -0.9
VPS39-205ENST00000562258 NCF1CA8MVU1 366 aaPredicted RBP9.43□□□□□ -0.9
VPS39-205ENST00000562258 E9PAM4 449 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 TGM5O43548 720 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 NCF1P14598 390 aaPredicted RBP9.43□□□□□ -0.9
VPS39-205ENST00000562258 MGAT1P26572 445 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 PBX1P40424 430 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 MAPK9P45984 424 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 GLRBP48167 497 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 DGKGP49619 791 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 OCRLQ01968 901 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 TTC31Q49AM3 519 aaPredicted RBP9.43□□□□□ -0.9
VPS39-205ENST00000562258 HSP90AA5PQ58FG0 334 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 SGO1Q5FBB7 561 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 BRMS1LQ5PSV4 323 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 GKAP1Q5VSY0 366 aaPredicted RBP9.43□□□□□ -0.9
VPS39-205ENST00000562258 ARHGAP17Q68EM7 881 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 GRAMD4Q6IC98 578 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 ANGPTL8Q6UXH0 198 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 STRADAQ7RTN6 431 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 OTOP3Q7RTS5 596 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 KLK6Q92876 244 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 TRIM43Q96BQ3 446 aaPredicted RBP9.43□□□□□ -0.9
VPS39-205ENST00000562258 SPATA16Q9BXB7 569 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 OSBPL7Q9BZF2 842 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 CLPBQ9H078 707 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 ZNF576Q9H609 170 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.43□□□□□ -0.9
VPS39-205ENST00000562258 KIAA1522Q9P206 1035 aaPredicted RBP9.43□□□□□ -0.9
VPS39-205ENST00000562258 HECAQ9UBI9 543 aaPredicted RBP9.43□□□□□ -0.9
VPS39-205ENST00000562258 PCDHGC4Q9Y5F7 938 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 FGF10O15520 208 aaPredicted RBP9.43□□□□□ -0.9
VPS39-205ENST00000562258 CLDN11O75508 207 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 DNTTP04053 509 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 FNTAP49354 379 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms