RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 LRRTM3Q86VH5 581 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 EXOC3L1Q86VI1 746 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 HERC6Q8IVU3 1022 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 SH2D3CQ8N5H7 860 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 CCDC110Q8TBZ0 833 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 PHOSPHO2Q8TCD6 241 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 ZNF398Q8TD17 642 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 FBF1Q8TES7 1133 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 EDEM1Q92611 657 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 TEKT5Q96M29 485 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 FCRL5Q96RD9 977 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 SEPT5Q99719 369 aaPredicted RBP7.7□□□□□ -1.18
VPS39-204ENST00000561818 FAM118BQ9BPY3 351 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 C19orf43Q9BQ61 176 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 FSD1LQ9BXM9 530 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 MAGEH1Q9H213 219 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 VPS11Q9H270 941 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 TRPC7Q9HCX4 862 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 MRPL17Q9NRX2 175 aaKnown RBP7.7□□□□□ -1.18
VPS39-204ENST00000561818 MRGBPQ9NV56 204 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 TMLHEQ9NVH6 421 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 COX16Q9P0S2 106 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 SAE1Q9UBE0 346 aaPredicted RBP7.7□□□□□ -1.18
VPS39-204ENST00000561818 DNAJB4Q9UDY4 337 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 RABGEF1Q9UJ41 708 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 METRNQ9UJH8 293 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 FAM169AQ9Y6X4 670 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.69□□□□□ -1.18
VPS39-204ENST00000561818 A0A1W2PQH9 124 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 TCRBV9S1A1TA0A576 114 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 SMIM23A6NLE4 172 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 SLC38A8A6NNN8 435 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 I3L4J1 428 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 PFDN6O15212 129 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 TLR5O60602 858 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 LPXNO60711 386 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 HNRNPCL1O60812 293 aaKnown RBP7.69□□□□□ -1.18
VPS39-204ENST00000561818 RAMP2O60895 175 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 H2AFYO75367 372 aaKnown RBP7.69□□□□□ -1.18
VPS39-204ENST00000561818 CLDN11O75508 207 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 ABLIM3O94929 683 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 EFEMP2O95967 443 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 EPOP01588 193 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 ITGB1P05556 798 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 ADH1AP07327 375 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 GSTA1P08263 222 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 ALADP13716 330 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 CCNB1P14635 433 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 CHN1P15882 459 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 RAG1P15918 1043 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 TFE3P19532 575 aaPredicted RBP7.69□□□□□ -1.18
VPS39-204ENST00000561818 PTPN3P26045 913 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 DDX6P26196 483 aaKnown RBP eCLIP7.69□□□□□ -1.18
VPS39-204ENST00000561818 MAPK8P45983 427 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 CCT5P48643 541 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 ATP1A2P50993 1020 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 PRKAA2P54646 552 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 CSE1LP55060 971 aaKnown RBP7.69□□□□□ -1.18
VPS39-204ENST00000561818 PDE1BQ01064 536 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 CAP1Q01518 475 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 IL10RBQ08334 325 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 MGAT5Q09328 741 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 INSCQ1MX18 579 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 C5orf22Q49AR2 442 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 SPDYAQ5MJ70 313 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 C10orf120Q5SQS8 335 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 GRTP1Q5TC63 336 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 AFMIDQ63HM1 303 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 PDPK2PQ6A1A2 396 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 PDE12Q6L8Q7 609 aaKnown RBP7.69□□□□□ -1.18
VPS39-204ENST00000561818 CASC4Q6P4E1 433 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 KYAT3Q6YP21 454 aaKnown RBP7.69□□□□□ -1.18
VPS39-204ENST00000561818 KIAA0408Q6ZU52 694 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 HFE2Q6ZVN8 426 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 SCD5Q86SK9 330 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 SETD3Q86TU7 594 aaPredicted RBP7.69□□□□□ -1.18
VPS39-204ENST00000561818 NLRP14Q86W24 1093 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 SRRM1Q8IYB3 904 aaKnown RBP7.69□□□□□ -1.18
VPS39-204ENST00000561818 TCEAL8Q8IYN2 117 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 ZNF567Q8N184 647 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 SLC39A11Q8N1S5 342 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 DNAAF3Q8N9W5 541 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 GLIS1Q8NBF1 620 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 PPHLN1Q8NEY8 458 aaKnown RBP7.69□□□□□ -1.18
VPS39-204ENST00000561818 DEPDC1BQ8WUY9 529 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 MAML1Q92585 1016 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 ZNF689Q96CS4 500 aaPredicted RBP7.69□□□□□ -1.18
VPS39-204ENST00000561818 ZNF512Q96ME7 567 aaPredicted RBP7.69□□□□□ -1.18
VPS39-204ENST00000561818 TSNARE1Q96NA8 513 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 YME1L1Q96TA2 773 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 IL12RB2Q99665 862 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 CPNE1Q99829 537 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 FAM167BQ9BTA0 163 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 EMILIN2Q9BXX0 1053 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 GPR62Q9BZJ7 368 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 TRABDQ9H4I3 376 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 CWH43Q9H720 699 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 ACTR5Q9H9F9 607 aaPredicted RBP7.69□□□□□ -1.18
VPS39-204ENST00000561818 SP110Q9HB58 689 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 KCNK9Q9NPC2 374 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms